genome.fa.s1360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001360.1 Hibiscus syriacus cultivar Beakdansim tig00002652_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69574

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632--672	22	1.9	21	85	5	55	41	0	7	51	1.30
1895--1936	22	1.9	22	85	9	59	23	4	0	71	1.05
5247--5287	17	2.5	16	82	17	57	63	0	0	36	0.95
5776--5845	22	3.2	22	95	0	122	65	18	2	12	1.38
5771--5845	11	6.8	11	79	0	87	66	18	2	12	1.35
5771--5861	22	4.2	21	88	1	101	64	18	3	13	1.41
11086--11171	3	30.0	3	75	13	74	33	1	0	65	1.01
11087--11180	23	4.2	23	72	18	72	36	1	0	62	1.02
12424--12739	146	2.2	143	81	11	356	40	7	6	45	1.57
14635--14721	43	2.0	44	88	2	131	29	11	24	34	1.90
17335--17470	72	1.9	72	90	3	220	28	21	15	34	1.94
22586--22916	112	2.9	112	92	1	529	38	16	19	26	1.92
22964--23063	38	2.6	39	93	3	166	46	10	23	21	1.81
23506--23582	3	27.0	3	72	15	65	32	1	0	66	1.00
23507--23580	17	4.4	17	72	16	55	32	1	0	66	1.00
23503--23578	25	3.1	23	77	14	64	30	1	0	68	0.98
24448--24480	11	3.1	11	95	4	59	84	0	15	0	0.61
24450--24481	10	3.1	10	95	4	55	87	0	12	0	0.54
25346--25372	9	3.0	9	100	0	54	66	0	0	33	0.92
36014--36562	287	1.9	287	100	0	1098	30	19	17	31	1.95
36673--36726	19	2.8	19	72	10	65	29	18	20	31	1.96
36646--36747	38	2.7	38	79	0	114	25	25	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37134--37194	23	2.5	26	81	15	92	16	47	21	14	1.82
37144--37194	23	2.2	23	96	0	93	15	47	23	13	1.82
46283--46391	54	2.0	54	100	0	218	47	7	14	30	1.71
47020--47049	13	2.3	13	94	0	51	23	13	20	43	1.86
49622--49649	12	2.3	12	100	0	56	42	28	14	14	1.84
49996--53051	707	4.3	709	83	5	3607	30	16	17	35	1.93
52519--52547	14	2.1	14	100	0	58	34	6	27	31	1.83
55531--55566	2	18.0	2	100	0	72	50	0	0	50	1.00
56019--56055	19	1.9	19	94	0	65	32	29	16	21	1.95
56128--56218	41	2.2	41	80	7	105	36	18	17	27	1.94
56803--56877	33	2.2	34	85	2	98	16	20	22	41	1.90
56882--56920	20	2.0	20	89	0	60	10	7	17	64	1.48
58514--58569	21	2.7	21	80	5	60	21	16	33	28	1.95
58839--58905	20	3.3	20	85	0	80	37	22	19	20	1.95
59034--59077	20	2.2	20	91	0	70	18	20	25	36	1.95
59064--59108	20	2.2	20	92	0	72	17	13	20	48	1.80
59586--59766	42	4.3	42	78	1	130	23	37	16	23	1.94
59586--59746	21	7.7	21	76	4	128	22	36	16	23	1.94
59586--59727	63	2.3	63	100	0	284	23	38	14	23	1.92
61295--61352	20	2.9	20	84	0	80	43	24	17	15	1.87
61391--61541	20	7.8	20	83	8	188	24	19	22	33	1.97
61342--61541	94	2.1	94	85	2	260	24	19	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61467--61493	14	1.9	14	100	0	54	7	14	29	48	1.71
61431--61533	54	1.9	54	95	0	188	20	18	27	33	1.96
61515--61794	140	2.0	140	97	0	533	42	15	13	28	1.85
63838--63875	14	2.6	14	91	4	58	10	18	21	50	1.76
63867--63902	3	12.0	3	100	0	72	0	33	0	66	0.92
64966--65020	20	2.7	20	82	2	65	29	20	16	34	1.94
66259--66299	18	2.3	18	87	8	57	56	0	2	41	1.13
66603--66686	41	2.0	41	90	4	134	48	9	10	30	1.70
66679--66706	13	2.2	13	100	0	56	50	14	7	28	1.69
68773--68832	20	3.0	20	95	0	102	15	15	18	51	1.76

Tables:   1

The End!