Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001361.1 Hibiscus syriacus cultivar Beakdansim tig00002653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50588

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
728--768
11
3.9
10
84
9
55
87
0
12
0
0.53
738--774
17
2.2
17
95
0
65
86
0
13
0
0.57
2889--3082
76
2.5
81
83
11
269
27
12
22
37
1.91
5254--5375
51
2.4
52
83
6
151
36
13
27
23
1.92
5274--5395
51
2.3
51
83
4
145
35
13
23
27
1.93
5744--5797
21
2.5
22
84
3
74
33
11
14
40
1.82
6465--7279
75
10.9
76
94
3
1438
22
20
20
36
1.95
6465--7279
149
5.4
151
94
3
1400
22
20
20
36
1.95
7504--7562
3
19.3
3
79
10
57
30
0
3
66
1.08
9110--9143
17
2.0
17
88
0
50
50
5
8
35
1.58
9588--9626
3
13.0
3
89
10
62
30
2
0
66
1.05
10559--10724
43
3.9
42
87
1
208
22
28
20
28
1.98
10559--10724
86
2.0
84
86
2
233
22
28
20
28
1.98
13707--13765
24
2.5
23
83
2
82
32
23
25
18
1.97
13748--13845
23
4.2
23
81
3
117
32
25
24
17
1.97
13748--13858
23
4.8
23
77
9
93
34
24
24
17
1.96
19269--19424
30
5.4
28
83
7
181
61
4
12
21
1.48
19269--19437
57
2.9
58
85
5
227
60
5
13
20
1.53
21145--21276
43
3.2
43
71
15
132
25
15
34
25
1.95
21179--21310
40
3.3
40
74
13
119
21
15
34
28
1.95
21129--21310
83
2.2
81
86
3
240
24
17
32
26
1.96
27502--27694
30
6.5
30
80
4
151
59
7
12
20
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27502--27694
59
3.3
59
80
7
162
59
7
12
20
1.57
27542--27694
29
5.2
29
85
4
182
62
7
11
19
1.51
27542--27694
59
2.6
59
85
5
193
62
7
11
19
1.51
29060--29100
3
13.7
3
85
10
57
63
2
2
31
1.20
30015--30052
18
2.1
19
85
5
51
65
7
5
21
1.38
31237--31291
12
4.7
12
88
2
85
25
40
1
32
1.66
32894--32979
3
29.7
3
88
6
133
36
0
1
62
1.03
32973--33014
20
2.0
20
86
9
57
52
4
0
42
1.22
35107--35144
15
2.8
13
88
11
51
23
5
2
68
1.23
38350--38382
15
2.1
16
94
5
59
33
18
6
42
1.75
45635--45700
10
6.9
10
77
16
68
83
0
16
0
0.65
45631--45701
6
12.2
6
76
16
60
83
0
16
0
0.66
45631--45701
16
4.4
16
85
5
99
83
0
16
0
0.66
45631--45701
31
2.2
33
92
5
119
83
0
16
0
0.66
46023--46063
18
2.4
17
84
11
57
34
4
7
53
1.50
47686--48342
220
2.9
220
87
6
858
37
13
19
30
1.89
48653--48729
3
26.7
3
84
7
106
36
2
0
61
1.10
48653--48729
20
3.8
19
86
10
109
36
2
0
61
1.10
48653--48729
23
3.2
23
82
10
100
36
2
0
61
1.10
48725--48763
11
3.8
10
86
10
53
56
2
0
41
1.13

Tables:   1

The End!