genome.fa.s1363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001363.1 Hibiscus syriacus cultivar Beakdansim tig00002656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70063

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3454--3487	12	2.8	12	90	0	59	17	23	26	32	1.97
4719--4781	33	1.9	32	90	3	99	38	17	9	34	1.82
5483--5885	186	2.2	180	81	6	452	32	14	11	41	1.82
6285--6315	10	3.1	10	95	0	53	19	9	32	38	1.84
12102--12167	34	1.9	34	84	0	87	22	37	22	16	1.93
12275--12326	13	3.8	14	85	10	63	46	36	0	17	1.48
13174--13287	30	3.8	30	74	4	104	22	8	11	57	1.61
13173--13285	60	1.9	60	83	3	147	23	8	10	57	1.60
19196--19258	32	1.9	33	87	3	92	31	19	14	34	1.91
19194--19278	33	2.6	32	78	10	100	32	18	12	35	1.89
19386--19494	33	3.3	34	78	11	118	31	18	11	39	1.85
19639--19833	43	4.5	43	75	11	184	24	31	18	25	1.98
19682--19840	83	1.9	85	84	6	216	25	31	16	26	1.97
19618--20351	127	5.8	128	83	3	673	27	26	18	27	1.98
19618--20351	254	2.9	254	79	5	793	27	26	18	27	1.98
20803--20870	34	2.0	34	85	0	91	22	36	23	17	1.94
20984--21035	13	3.8	14	85	10	63	46	36	0	17	1.48
21881--21993	30	3.8	30	73	6	86	22	8	9	59	1.57
21881--21975	30	3.2	30	72	14	88	24	7	7	61	1.48
22607--22670	32	2.0	32	84	0	83	25	29	28	17	1.97
22709--22749	15	2.6	16	88	3	66	26	29	31	12	1.92
30711--30757	16	2.6	18	80	19	62	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30726--30758	16	2.1	16	100	0	66	33	18	24	24	1.97
35007--35101	2	47.5	2	95	4	174	49	1	0	49	1.07
41134--41158	10	2.5	10	100	0	50	64	0	0	36	0.94
44198--44228	2	15.5	2	100	0	62	51	0	0	48	1.00
63047--63101	21	2.6	21	72	11	58	23	34	30	10	1.89

Tables:   1

The End!