genome.fa.s1364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001364.1 Hibiscus syriacus cultivar Beakdansim tig00002657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79971

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
814--1169	54	6.7	54	86	5	447	32	17	19	31	1.95
839--922	26	3.2	26	63	24	66	30	15	20	33	1.94
2256--2304	23	2.1	22	85	14	64	55	6	4	34	1.44
2255--2306	24	2.2	24	80	19	65	55	5	3	34	1.42
8146--8170	12	2.1	12	100	0	50	0	60	0	40	0.97
8144--8173	14	2.1	14	93	0	51	0	60	0	40	0.97
10096--10130	18	2.1	17	89	10	54	17	25	20	37	1.94
10755--10781	4	6.8	4	100	0	54	48	25	0	25	1.52
15831--15900	30	2.3	30	92	0	113	14	12	45	27	1.81
22863--22908	20	2.3	19	85	14	58	50	8	15	26	1.73
23348--23373	11	2.4	11	100	0	52	26	26	11	34	1.91
25343--25427	42	2.0	42	93	0	143	34	25	15	24	1.95
28283--28338	26	2.2	25	96	3	103	33	32	14	19	1.92
32149--32294	41	3.6	41	78	10	156	31	19	20	28	1.97
32137--32323	82	2.3	80	73	12	193	31	17	20	31	1.96
34331--34371	21	2.0	21	100	0	82	19	7	19	53	1.68
34493--34914	43	9.9	43	83	2	498	26	24	18	30	1.98
34492--34914	128	3.3	128	86	2	523	26	24	18	30	1.98
43975--44003	3	10.0	3	92	7	51	68	0	0	31	0.89
44048--44090	18	2.5	17	85	7	61	67	2	4	25	1.22
44824--44866	19	2.3	19	95	0	77	37	25	9	27	1.87
45262--45878	105	5.9	105	93	1	974	22	17	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46490--46680	67	2.9	65	79	8	197	37	9	21	30	1.87
46656--46779	36	3.4	36	82	6	160	40	13	20	25	1.89
47746--47789	22	2.0	22	91	8	72	27	11	22	38	1.88
48388--48425	9	4.6	8	87	12	51	0	10	5	84	0.77
48377--48428	24	2.2	24	80	12	63	0	13	5	80	0.88
49619--49657	8	5.0	8	84	6	53	58	12	17	10	1.61
49619--49657	15	2.5	15	87	4	51	58	12	17	10	1.61
51042--51070	5	5.8	5	100	0	58	82	0	0	17	0.66
52770--52812	18	2.5	17	85	7	61	67	2	4	25	1.22
56890--56940	25	2.0	25	92	0	84	45	5	13	35	1.68
57663--57722	23	2.6	23	84	5	77	15	41	11	31	1.82
57662--57752	23	3.9	23	77	1	74	13	43	14	28	1.82
57714--57767	24	2.2	24	87	6	74	16	46	12	24	1.82
58770--58800	11	2.8	11	95	0	53	29	0	0	70	0.87
64771--64843	5	14.6	5	75	16	71	79	1	19	0	0.81
64767--64837	20	3.7	19	79	9	81	78	1	19	0	0.82
64769--64843	22	3.5	21	76	16	82	80	1	18	0	0.79
64769--64837	12	5.5	12	76	13	59	79	1	18	0	0.80
66248--66492	51	4.8	50	87	4	348	36	16	22	24	1.94
66248--66492	101	2.4	100	89	4	366	36	16	22	24	1.94
66501--66593	41	2.3	41	80	17	97	37	11	21	29	1.89
67008--67035	14	2.0	14	100	0	56	21	14	28	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68044--68422	173	2.2	176	88	2	550	31	18	20	29	1.97
69599--69707	50	2.2	52	86	5	152	35	11	12	39	1.81
72018--72044	2	13.5	2	100	0	54	51	0	48	0	1.00
76884--76939	15	3.6	15	81	9	67	44	10	12	32	1.77
76887--76920	17	2.0	17	100	0	68	41	11	11	35	1.78
76891--76929	17	2.3	17	86	0	51	56	10	10	23	1.63
78043--78141	33	3.0	33	94	1	164	45	15	7	32	1.73
78136--78176	21	2.0	21	95	0	73	43	7	17	31	1.76

Tables:   1

The End!