Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001366.1 Hibiscus syriacus cultivar Beakdansim tig00002667_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75653
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:13130 original size:20 final size:20
Alignment explanation
Indices: 13105--13166 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
13095 TCGAAATGTA
13105 GTGCATGGATGCACTA-CATG
1 GTGCATGGATGCACTAGCA-G
*
13125 GTGCATCGATGCACTAGTGGCAG
1 GTGCATGGATGCACTA---GCAG
13148 GTGCATGGATGCACT-GCAG
1 GTGCATGGATGCACTAGCAG
13167 AGGTACATGG
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
19 4 0.11
20 15 0.42
23 15 0.42
24 2 0.06
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.23
Consensus pattern (20 bp):
GTGCATGGATGCACTAGCAG
Found at i:13310 original size:31 final size:30
Alignment explanation
Indices: 13266--13323 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
13256 CTTTGAATAG
13266 ATTCAATTAAGTCCAAAAACCATTTTGTAA
1 ATTCAATTAAGTCCAAAAACCATTTTGTAA
* *
13296 ATTCTATTCAAGTCCAAAAACCGTTTTG
1 ATTCAATT-AAGTCCAAAAACCATTTTG
13324 CCTTAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (30 bp):
ATTCAATTAAGTCCAAAAACCATTTTGTAA
Found at i:16157 original size:32 final size:34
Alignment explanation
Indices: 16116--16185 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
16106 ACCTTACAAC
*
16116 TCCCTAGTTTTT-C-CGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTTACACGGGATAAACTAGAACCTT
* *
16148 TCCCTAGTTTTTACACGGGATAAGCTAGAACTTT
1 TCCCTAGTTTTTACACGGGATAAACTAGAACCTT
16182 TCCC
1 TCCC
16186 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 12 0.36
33 1 0.03
34 20 0.61
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (34 bp):
TCCCTAGTTTTTACACGGGATAAACTAGAACCTT
Found at i:16546 original size:17 final size:16
Alignment explanation
Indices: 16524--16557 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
16514 TAAAAACAAT
16524 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
16541 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
16557 A
1 A
16558 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:17076 original size:24 final size:24
Alignment explanation
Indices: 17032--17078 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
17022 ATAAAGAACC
*
17032 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
17056 AAAATAAAGTTTAAACA-ACCATT
1 AAAATAAA-CTTAAACATACCATT
17079 CAACCAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:20409 original size:19 final size:20
Alignment explanation
Indices: 20382--20424 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
20372 GAGAAAAAGT
*
20382 AAAAGTTAA-AATGAAAGAG
1 AAAAATTAATAATGAAAGAG
*
20401 AAAAATTAATAATGAAAGAT
1 AAAAATTAATAATGAAAGAG
20421 AAAA
1 AAAA
20425 GAAAAAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.14, T:0.19
Consensus pattern (20 bp):
AAAAATTAATAATGAAAGAG
Found at i:26803 original size:17 final size:16
Alignment explanation
Indices: 26781--26814 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26771 TAAAAATAGT
26781 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
26798 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
26814 A
1 A
26815 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:28357 original size:20 final size:20
Alignment explanation
Indices: 28332--28426 Score: 163
Period size: 20 Copynumber: 4.8 Consensus size: 20
28322 TTGCAGCCTT
*
28332 GATGCATGGATGCACAGCAG
1 GATGCATCGATGCACAGCAG
*
28352 GATGCATGGATGCACAGCAG
1 GATGCATCGATGCACAGCAG
28372 GATGCATCGATGCACAGCAG
1 GATGCATCGATGCACAGCAG
*
28392 GATGCATTGATGCACAGCAG
1 GATGCATCGATGCACAGCAG
28412 GATGCATCGATGCAC
1 GATGCATCGATGCAC
28427 TAAGTGCATT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 72 1.00
ACGTcount: A:0.29, C:0.22, G:0.32, T:0.17
Consensus pattern (20 bp):
GATGCATCGATGCACAGCAG
Found at i:28499 original size:23 final size:23
Alignment explanation
Indices: 28465--28526 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
28455 TGCACTACAT
* *
28465 GGTGCATCGATGTACTAGTGGCA
1 GGTGCATAGATGCACTAGTGGCA
28488 GGTGCATAGATGCACTAGTGGCA
1 GGTGCATAGATGCACTAGTGGCA
* *
28511 AGTGCATGGATGCACT
1 GGTGCATAGATGCACT
28527 GCAGGGGTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (23 bp):
GGTGCATAGATGCACTAGTGGCA
Found at i:28661 original size:30 final size:31
Alignment explanation
Indices: 28627--28687 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
28617 AAACTTTGAA
28627 TAAATTCAATT-AAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
28657 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
28688 CCTTAAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 11 0.37
31 19 0.63
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.33
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:43849 original size:11 final size:10
Alignment explanation
Indices: 43832--43867 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
43822 ATTTGCACGA
43832 TTTTTCCTTT
1 TTTTTCCTTT
43842 TCTTTTCCTTT
1 T-TTTTCCTTT
*
43853 TTTTTTCTTT
1 TTTTTCCTTT
43863 TTTTT
1 TTTTT
43868 AGGTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTCCTTT
Found at i:44858 original size:165 final size:162
Alignment explanation
Indices: 44570--44897 Score: 579
Period size: 165 Copynumber: 2.0 Consensus size: 162
44560 TATGTCCTCA
**
44570 ATGTATCAAAAGTAGATGCTCAAAAACCATAAAAGATAAGAGTAGAAAACTCCCCTAAAAATGTG
1 ATGTATCAAAAGTAGATGCTCAAAAACCATAAAAGATAAGAGTAGAAAAAACCCCTAAAAATGTG
44635 AGCATCAACGACAAATATGTCACGAGTTGGGGAGTGAAGGTGATGTGGCGGCTAGGTTGATTCTC
66 AGCATCAACGACAAATATGTCACGAGTTGGGGAGTGAAGGTGATGTGGCGGCTAGGTTGATTCTC
44700 GGACTAAGCGGAGA-GTGGGTCGGGTGGAGCG
131 GGACTAAGCGGAGACGTGGGTCGGGTGGAGCG
44731 ATGTATCAAAAGTAGATGCTCAAAAACCATAAAAGAATAAGAGTAGAAAAAAACCCCTAAAAATG
1 ATGTATCAAAAGTAGATGCTCAAAAACCATAAAAG-ATAAGAGTAG-AAAAAACCCCTAAAAATG
44796 TTGAGCATCAACGACAATATATGTCACGAGTTGGGGAGTGAA-GTGATGTGGTCGGCTAGGTTGA
64 -TGAGCATCAACGACAA-ATATGTCACGAGTTGGGGAGTGAAGGTGATGTGG-CGGCTAGGTTGA
44860 TTCTCGGACTAAGCGGAGACGTGGGTCGGGTGGAGCG
126 TTCTCGGACTAAGCGGAGACGTGGGTCGGGTGGAGCG
44897 A
1 A
44898 GAGGACGGCT
Statistics
Matches: 159, Mismatches: 2, Indels: 7
0.95 0.01 0.04
Matches are distributed among these distances:
161 35 0.22
162 10 0.06
163 16 0.10
164 25 0.16
165 55 0.35
166 18 0.11
ACGTcount: A:0.35, C:0.15, G:0.30, T:0.21
Consensus pattern (162 bp):
ATGTATCAAAAGTAGATGCTCAAAAACCATAAAAGATAAGAGTAGAAAAAACCCCTAAAAATGTG
AGCATCAACGACAAATATGTCACGAGTTGGGGAGTGAAGGTGATGTGGCGGCTAGGTTGATTCTC
GGACTAAGCGGAGACGTGGGTCGGGTGGAGCG
Found at i:46547 original size:102 final size:102
Alignment explanation
Indices: 46426--46636 Score: 309
Period size: 102 Copynumber: 2.1 Consensus size: 102
46416 CTCAAGAATT
*
46426 TCTTTCTCTTCTTCTTCTTT-TCTGGACTTAGAAAATCTAGAGGGAAAAGGA-GGTTCTATGAAA
1 TCTTTCTCTTCTTCTTCTTTCT-TGGACTTAGAAAATCTAGAGGGAAAAGGATGATT-TATGAAA
46489 AATTCATTCGATTTTTCACTTTTGAGTCCTTTAGGTTGG
64 AATTCATTCGATTTTTCACTTTTGAGTCCTTTAGGTTGG
* ** * *
46528 TCTTTCTCTTCTTTTTCTTTCTTGGACTTAGCGAATCTAGTGGGAAAAGGATGATTTATGACAAA
1 TCTTTCTCTTCTTCTTCTTTCTTGGACTTAGAAAATCTAGAGGGAAAAGGATGATTTATGAAAAA
* * *
46593 TTCCTTCGGTTTTTCGCTTTTGAGTCCTTTAGGTTGG
66 TTCATTCGATTTTTCACTTTTGAGTCCTTTAGGTTGG
46630 TCTTTCT
1 TCTTTCT
46637 GAGTCTGAGG
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
102 94 0.96
103 4 0.04
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.45
Consensus pattern (102 bp):
TCTTTCTCTTCTTCTTCTTTCTTGGACTTAGAAAATCTAGAGGGAAAAGGATGATTTATGAAAAA
TTCATTCGATTTTTCACTTTTGAGTCCTTTAGGTTGG
Found at i:48886 original size:12 final size:11
Alignment explanation
Indices: 48838--48883 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
48828 ACAAAAAAAG
*
48838 AACTTAAAGAA
1 AACTTAATGAA
* *
48849 AACCTAGTGAA
1 AACTTAATGAA
48860 AACTTAATGAA
1 AACTTAATGAA
*
48871 AACTTTATGAA
1 AACTTAATGAA
48882 AA
1 AA
48884 ACTGATGCCC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.24
Consensus pattern (11 bp):
AACTTAATGAA
Found at i:50450 original size:25 final size:26
Alignment explanation
Indices: 50413--50465 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
50403 GATATAATCC
*
50413 TATATAGAATAAAA-AAATACATCAA
1 TATACAGAATAAAAGAAATACATCAA
* * *
50438 TATACAGATTAAAAGTAATGCATCAA
1 TATACAGAATAAAAGAAATACATCAA
50464 TA
1 TA
50466 ATCAGAAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.57, C:0.09, G:0.08, T:0.26
Consensus pattern (26 bp):
TATACAGAATAAAAGAAATACATCAA
Found at i:51458 original size:22 final size:22
Alignment explanation
Indices: 51430--51473 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
51420 ATCAAAGAAA
51430 AACCAAAACATAAGATGGTTGT
1 AACCAAAACATAAGATGGTTGT
51452 AACCAAAACATAAGATGGTTGT
1 AACCAAAACATAAGATGGTTGT
51474 GTGTGTGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23
Consensus pattern (22 bp):
AACCAAAACATAAGATGGTTGT
Found at i:52701 original size:138 final size:138
Alignment explanation
Indices: 52453--52731 Score: 470
Period size: 138 Copynumber: 2.0 Consensus size: 138
52443 TTCAAAAAAA
52453 AATACAATCAACTCAACATACTCTAAATTCTAAATTAATAGAAAAATAATATCAACTAAATTAAA
1 AATACAATCAACTCAACATACTCTAAATTCTAAATTAATAGAAAAATAATATCAACTAAATTAAA
* * *
52518 AATTGATCGGTATAGTTTGAATTAATTAGATACTTACAAAATTTGTTTGTTAAAAGATTTGACCC
66 AATTGATCGATATAGTTTGAATTAATTAGATAATTACAAAATTTGTTTGTTAAAAGACTTGACCC
52583 TTATGAAC
131 TTATGAAC
* * *
52591 AATACAATCAACTCAACATACTCTAAATGT-TAAATTATTATAATAATAATATCAACTAAATTAA
1 AATACAATCAACTCAACATACTCTAAAT-TCTAAATTAATAGAAAAATAATATCAACTAAATTAA
* *
52655 AATTTGATCGATATAGTTTGAATTAATTAGATAATTACAAAATTTGTTTGTTACAAGACTTGACC
65 AAATTGATCGATATAGTTTGAATTAATTAGATAATTACAAAATTTGTTTGTTAAAAGACTTGACC
52720 CTTATGAAC
130 CTTATGAAC
52729 AAT
1 AAT
52732 TTTTTATATC
Statistics
Matches: 132, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
138 131 0.99
139 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.35
Consensus pattern (138 bp):
AATACAATCAACTCAACATACTCTAAATTCTAAATTAATAGAAAAATAATATCAACTAAATTAAA
AATTGATCGATATAGTTTGAATTAATTAGATAATTACAAAATTTGTTTGTTAAAAGACTTGACCC
TTATGAAC
Found at i:67054 original size:25 final size:25
Alignment explanation
Indices: 67026--67090 Score: 130
Period size: 25 Copynumber: 2.6 Consensus size: 25
67016 ATAAGTAAAG
67026 CTTTACTTGCAAGAAAGCCTAAAAA
1 CTTTACTTGCAAGAAAGCCTAAAAA
67051 CTTTACTTGCAAGAAAGCCTAAAAA
1 CTTTACTTGCAAGAAAGCCTAAAAA
67076 CTTTACTTGCAAGAA
1 CTTTACTTGCAAGAA
67091 GAAAGCCTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (25 bp):
CTTTACTTGCAAGAAAGCCTAAAAA
Found at i:69690 original size:32 final size:32
Alignment explanation
Indices: 69649--69709 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
69639 GAGTAAATTT
* *
69649 TAATAACTCATGGTGTAATTTACCTTTTTTCC
1 TAATAACTCATAGTGTAATTTACCATTTTTCC
*
69681 TAATGACTCATAGTGTAATTTACCATTTT
1 TAATAACTCATAGTGTAATTTACCATTTT
69710 CCCCTCTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.46
Consensus pattern (32 bp):
TAATAACTCATAGTGTAATTTACCATTTTTCC
Found at i:73327 original size:19 final size:19
Alignment explanation
Indices: 73303--73340 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
73293 CTATGAACTA
73303 CTCCTTCCAAGCTTAAATT
1 CTCCTTCCAAGCTTAAATT
* *
73322 CTCCTTCTAAGCTTCAATT
1 CTCCTTCCAAGCTTAAATT
73341 TAAGCCCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.32, G:0.05, T:0.39
Consensus pattern (19 bp):
CTCCTTCCAAGCTTAAATT
Found at i:74373 original size:40 final size:40
Alignment explanation
Indices: 74281--74686 Score: 423
Period size: 40 Copynumber: 10.2 Consensus size: 40
74271 GCGTTTTAGA
* *
74281 ACAAACGCCGCTAAATACTTGTACTTTAGTGGCGTTTTTTT
1 ACAAACGCCGCTAAAGAC-TGTACTTTAGTGGCGTTTTTAT
* * *
74322 ACAAACG-CGCTAAAGACTGT-CTTTAGTGGCATATTTAGA
1 ACAAACGCCGCTAAAGACTGTACTTTAGTGGCGTTTTTA-T
* ** *
74361 ACAAACGCCGCTAAATACCCATACTTTAATGGCGTTTTTAAT
1 ACAAACGCCGCTAAAGA-CTGTACTTTAGTGGCGTTTTT-AT
* * *
74403 AC-AACGCCGATAAAGATTGTACTTTAGTGACGTTTTTAT
1 ACAAACGCCGCTAAAGACTGTACTTTAGTGGCGTTTTTAT
* *
74442 ACAAACGCCGCTATAGACTGTACTTTAGTGGTGTTTTTAT
1 ACAAACGCCGCTAAAGACTGTACTTTAGTGGCGTTTTTAT
*
74482 ACAAACGCCGCTATAGACTTGTACTTTAGTGGCGTTTTTAT
1 ACAAACGCCGCTAAAGAC-TGTACTTTAGTGGCGTTTTTAT
* *
74523 ACAAACGCCGCTAAAGTC-ATACTTTAGTGGCGTTTTTAT
1 ACAAACGCCGCTAAAGACTGTACTTTAGTGGCGTTTTTAT
* * * * * *
74562 ATAAATGTCGCTAAAGACTCATACTTTAGTGGC-ATTTAAT
1 ACAAACGCCGCTAAAGACT-GTACTTTAGTGGCGTTTTTAT
* *
74602 ACAAACGCCGCTATAGACTAGTCCTTTAGTGGCG-TTTTAT
1 ACAAACGCCGCTAAAGACT-GTACTTTAGTGGCGTTTTTAT
* * * *
74642 ATAAACGCCGCT--AGACTCTAACTTTAGTGGCATTTTTTT
1 ACAAACGCCGCTAAAGACTGT-ACTTTAGTGGCGTTTTTAT
74681 ACAAAC
1 ACAAAC
74687 ACGCTGTACA
Statistics
Matches: 305, Mismatches: 48, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
37 1 0.00
38 29 0.10
39 58 0.19
40 130 0.43
41 71 0.23
42 15 0.05
43 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (40 bp):
ACAAACGCCGCTAAAGACTGTACTTTAGTGGCGTTTTTAT
Found at i:74745 original size:40 final size:40
Alignment explanation
Indices: 74270--74749 Score: 390
Period size: 40 Copynumber: 12.0 Consensus size: 40
74260 GGTTTATAGC
* * * *
74270 GGCGTTTTAGAACAAACGCCGCTAAATACTTGTACTTTAGT
1 GGCGTTTTA-TACAAACGCCGCTATAGACTCGTACTTTAGT
* *
74311 GGCGTTTTTTTACAAACG-CGCTAAAGACT-GT-CTTTAGT
1 GGCG-TTTTATACAAACGCCGCTATAGACTCGTACTTTAGT
* * * * * * *
74349 GGCATATTTAGAACAAACGCCGCTAAATACCCATACTTTAAT
1 GGCGT-TTTA-TACAAACGCCGCTATAGACTCGTACTTTAGT
* * *
74391 GGCGTTTTTAATAC-AACGCCGATAAAGA-TTGTACTTTAGT
1 GGCG-TTTT-ATACAAACGCCGCTATAGACTCGTACTTTAGT
*
74431 GACGTTTTTATACAAACGCCGCTATAGACT-GTACTTTAGT
1 GGCG-TTTTATACAAACGCCGCTATAGACTCGTACTTTAGT
* *
74471 GGTGTTTTTATACAAACGCCGCTATAGACTTGTACTTTAGT
1 GGCG-TTTTATACAAACGCCGCTATAGACTCGTACTTTAGT
* *
74512 GGCGTTTTTATACAAACGCCGCTA-A-AGTCATACTTTAGT
1 GGCG-TTTTATACAAACGCCGCTATAGACTCGTACTTTAGT
* * * * *
74551 GGCGTTTTTATATAAATGTCGCTAAAGACTCATACTTTAGT
1 GGCG-TTTTATACAAACGCCGCTATAGACTCGTACTTTAGT
* * * *
74592 GGCATTTAATACAAACGCCGCTATAGACTAGTCCTTTAGT
1 GGCGTTTTATACAAACGCCGCTATAGACTCGTACTTTAGT
*
74632 GGCGTTTTATATAAACGCCGC--TAGACTC-TAACTTTAGT
1 GGCGTTTTATACAAACGCCGCTATAGACTCGT-ACTTTAGT
* * * * * * * *
74670 GGCATTTTTTTACAAAC-ACGCTGTACACTCATGCTTTACT
1 GGC-GTTTTATACAAACGCCGCTATAGACTCGTACTTTAGT
* * *
74710 GGTGTTTTATACAAACGCCGTTATAGACTCGTGCTTTAGT
1 GGCGTTTTATACAAACGCCGCTATAGACTCGTACTTTAGT
74750 TGGAGCCCCT
Statistics
Matches: 359, Mismatches: 61, Indels: 39
0.78 0.13 0.08
Matches are distributed among these distances:
37 2 0.01
38 32 0.09
39 66 0.18
40 164 0.46
41 75 0.21
42 18 0.05
43 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (40 bp):
GGCGTTTTATACAAACGCCGCTATAGACTCGTACTTTAGT
Done.