genome.fa.s1367.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001367.1 Hibiscus syriacus cultivar Beakdansim tig00002670_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44320

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1501--1560	18	3.4	18	71	13	61	65	0	13	21	1.27
3519--3576	30	1.9	30	82	0	71	37	18	13	29	1.90
8254--8305	22	2.3	22	80	6	59	28	26	19	25	1.98
8297--8354	30	1.9	30	92	0	98	36	18	17	27	1.94
10918--10968	16	3.2	16	80	0	66	23	23	11	41	1.87
12413--12494	20	4.0	20	73	14	60	29	29	14	26	1.95
12449--12596	20	7.2	21	67	17	78	30	26	12	30	1.93
12451--12516	22	3.0	23	72	12	68	28	28	13	28	1.94
12439--12599	81	2.0	81	83	10	204	29	26	13	30	1.94
12537--12597	21	3.0	21	80	9	63	36	24	9	29	1.88
12641--12725	18	4.4	19	69	16	50	27	23	12	36	1.91
12630--12704	39	1.9	39	86	0	105	29	21	12	37	1.89
12865--12897	16	2.2	16	89	10	52	30	3	0	66	1.06
13196--13280	20	4.2	20	80	14	93	50	22	12	14	1.76
13396--13430	16	2.3	15	90	5	52	65	11	0	22	1.24
14558--14628	21	3.4	20	84	3	88	22	18	36	22	1.95
14569--14633	21	3.1	21	93	0	112	21	18	40	20	1.92
14778--14818	4	10.2	4	83	0	55	68	4	0	26	1.10
14917--15025	42	2.6	43	78	5	116	36	30	12	20	1.90
14967--15088	63	1.9	63	83	3	156	30	34	14	20	1.93
15042--15091	21	2.4	21	86	0	73	34	34	14	18	1.90
14992--15091	42	2.4	41	77	8	112	30	36	14	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16871--16909	19	2.1	18	100	0	60	17	10	20	51	1.74
18964--19028	29	2.2	30	86	8	89	40	9	3	47	1.51
19746--19872	46	2.8	45	90	5	195	39	7	24	28	1.83
20365--20412	13	3.6	13	80	2	51	14	18	18	47	1.82
22116--22148	14	2.4	14	100	0	66	15	15	27	42	1.86
22116--22154	14	2.7	14	92	4	51	17	12	30	38	1.88
32008--32047	20	2.0	20	95	0	71	22	25	32	20	1.98
40223--40286	2	33.0	2	90	6	105	48	1	0	50	1.10
40350--40384	13	2.7	13	90	0	52	48	2	0	48	1.16
40472--40525	17	3.1	17	83	2	72	57	3	1	37	1.27
40452--40523	15	5.0	15	74	16	71	56	2	5	34	1.37
40477--40577	28	3.7	27	78	13	82	48	4	0	45	1.30
40651--40838	8	25.1	8	69	22	101	35	7	2	54	1.44
40731--41044	2	160.0	2	62	21	60	40	5	2	51	1.39
40661--40891	65	3.6	62	72	19	181	35	7	3	54	1.44
40658--40834	67	2.6	71	77	16	178	35	7	2	54	1.43
40634--41015	22	18.0	22	69	19	115	39	6	2	51	1.41
40946--41045	25	4.3	25	72	19	90	48	3	2	47	1.28
40888--41046	73	2.2	68	79	12	160	45	3	2	48	1.34
41189--41279	17	5.5	16	73	18	62	42	2	3	51	1.30
41189--41249	2	29.5	2	74	12	52	44	1	4	49	1.33
41199--41544	7	50.7	7	71	23	137	38	4	1	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41267--41538	6	42.3	6	72	17	120	36	5	1	56	1.32
41433--41523	2	47.0	2	80	10	109	43	2	0	53	1.12
41746--41981	2	120.0	2	64	21	72	45	3	3	46	1.39
41770--41870	33	2.9	34	77	12	116	43	5	2	47	1.42
41847--41895	11	4.5	11	85	12	66	42	0	6	51	1.27
41856--41981	9	13.4	9	66	20	53	46	2	3	47	1.34
41754--41972	29	6.6	33	68	21	111	45	4	4	46	1.41
41876--41977	38	2.6	39	84	10	129	47	2	3	46	1.36
41877--41982	39	2.6	41	80	13	128	48	2	3	45	1.35

Tables:   1

The End!