genome.fa.s1368.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001368.1 Hibiscus syriacus cultivar Beakdansim tig00002671_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67717

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1784--1822	16	2.4	16	83	12	53	48	0	0	51	1.00
3292--3332	21	2.0	21	85	4	57	46	14	0	39	1.45
4356--4522	59	2.8	59	81	6	169	41	4	21	32	1.72
5048--5106	15	4.1	15	80	10	70	32	0	1	66	1.02
5060--5115	28	2.0	27	86	10	78	26	0	3	69	1.04
5306--5787	85	5.8	83	79	5	456	30	25	19	24	1.98
5306--5787	170	2.9	165	82	3	520	30	25	19	24	1.98
6132--6185	3	17.7	3	81	14	58	29	0	0	70	0.88
6132--6185	27	2.0	28	92	3	92	29	0	0	70	0.88
6235--6307	33	2.2	33	95	0	128	41	20	10	27	1.86
7588--7620	16	2.1	16	100	0	66	6	24	21	48	1.72
7590--7629	16	2.4	16	91	4	62	7	27	12	52	1.66
10416--11282	110	8.0	110	91	1	1209	34	22	18	24	1.96
10424--11198	329	2.4	330	91	2	1260	34	22	18	23	1.96
10478--11276	439	1.8	431	87	3	1061	34	22	18	24	1.96
11391--12154	84	9.2	82	76	8	580	30	24	19	25	1.98
11388--12110	249	2.9	249	88	1	1011	30	24	18	25	1.98
13896--14228	166	2.0	166	89	1	515	34	21	3	40	1.71
14324--14408	30	2.9	29	75	5	80	35	3	27	34	1.74
14547--14576	2	15.0	2	100	0	60	50	0	0	50	1.00
15055--15117	3	20.7	3	81	15	76	33	0	0	66	0.92
15055--15117	22	3.0	21	84	9	83	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15059--15109	13	4.0	13	80	19	63	33	0	0	66	0.92
15055--15109	19	2.9	19	84	15	71	34	0	0	65	0.93
15162--15230	33	2.1	33	97	0	129	42	20	10	27	1.84
15346--16078	84	8.8	83	80	6	711	30	25	19	23	1.98
15346--16078	249	2.9	249	89	3	1095	30	25	19	23	1.98
15344--16097	165	4.5	164	79	7	761	30	25	19	23	1.98
16419--16475	22	2.8	20	82	17	64	33	0	0	66	0.92
16419--16474	21	2.7	22	77	22	68	33	0	0	66	0.92
16525--16611	33	2.6	33	89	5	122	39	20	13	26	1.90
17009--17038	14	2.1	15	93	6	53	40	0	0	60	0.97
18614--18647	18	1.9	18	94	5	61	50	29	0	20	1.49
19765--19819	3	18.3	3	96	0	101	30	0	0	69	0.89
19763--19827	12	5.7	11	87	12	80	29	0	1	69	0.98
19935--20006	25	2.9	25	91	2	119	38	18	15	27	1.90
26887--26935	12	3.9	12	86	5	62	71	12	12	4	1.28
26865--26937	25	2.9	24	76	11	67	68	9	19	2	1.30
28106--28155	16	3.1	16	80	11	66	50	26	0	24	1.50
28508--28625	36	3.3	38	75	13	124	35	16	12	35	1.86
28508--28642	71	1.9	72	80	7	159	34	19	14	32	1.91
28728--28809	36	2.3	36	78	4	94	36	19	12	31	1.89
28783--29021	105	2.3	102	83	9	290	30	21	11	36	1.89
28967--29086	36	3.4	36	79	4	111	30	20	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29332--29434	29	3.7	28	88	5	163	30	8	15	45	1.76
29475--29537	29	2.1	30	91	2	101	36	7	14	41	1.75
29693--29916	121	1.9	118	82	6	281	30	14	12	42	1.82
29814--30172	63	5.6	65	71	11	210	29	16	12	41	1.85
29814--30172	128	2.8	129	74	9	333	29	16	12	41	1.85
30307--30402	36	2.7	34	79	10	95	30	16	12	40	1.86
30328--30402	35	2.1	36	85	7	100	36	18	10	34	1.86
30374--30554	66	2.8	63	82	8	197	28	18	12	40	1.87
30447--30521	36	2.1	36	82	9	91	25	17	12	45	1.82
30654--30978	40	7.6	44	70	11	185	26	31	18	23	1.98
30641--31005	43	8.5	45	69	15	175	26	31	18	23	1.98
30657--30978	130	2.5	130	89	3	488	26	30	18	23	1.98
31173--31223	3	16.3	3	84	15	68	31	0	0	68	0.90
31173--31231	19	2.8	21	85	15	86	30	0	1	67	1.00
31173--31223	16	3.4	16	82	17	74	31	0	0	68	0.90
31172--31223	19	2.7	20	94	5	90	30	0	0	69	0.89
31339--31410	25	2.9	25	93	2	119	38	19	15	26	1.91
34770--34799	3	9.7	3	92	7	51	30	0	0	70	0.88
34765--34821	22	2.8	20	80	17	55	28	5	0	66	1.13
34770--34811	22	1.9	22	85	9	59	30	2	0	66	1.04
34769--34818	22	2.3	21	80	16	57	28	4	0	68	1.08
35558--35596	14	2.8	14	100	0	78	33	28	0	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38765--38798	18	1.9	18	94	5	61	50	32	0	17	1.47
55361--55402	18	2.3	18	91	0	66	54	11	0	33	1.37
55369--55403	18	1.9	18	100	0	70	51	11	0	37	1.38
58847--59332	81	6.0	81	90	0	767	26	22	12	37	1.91
59278--59467	68	2.8	68	86	0	263	30	22	15	32	1.95
59665--59821	58	2.7	58	81	4	167	34	19	10	36	1.85
59851--59893	19	2.3	19	100	0	86	46	18	0	34	1.50
60130--60159	12	2.5	12	100	0	60	40	16	0	43	1.48
60214--60411	95	2.1	95	94	0	342	24	25	17	32	1.96
64386--64419	2	17.0	2	100	0	68	50	0	0	50	1.00
64584--65147	81	7.0	81	85	1	729	28	21	11	38	1.89
65097--65353	68	3.8	68	90	1	381	29	25	15	29	1.96
67285--67347	32	1.9	32	84	9	83	34	17	19	28	1.94
67499--67524	13	2.0	13	100	0	52	23	7	23	46	1.78

Tables:   1

The End!