genome.fa.s1369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001369.1 Hibiscus syriacus cultivar Beakdansim tig00002678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163235

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2238--2276	17	2.3	17	90	0	60	48	0	0	51	1.00
8755--8797	16	2.6	17	85	7	54	34	4	6	53	1.49
10626--10668	21	2.0	21	90	0	68	32	27	23	16	1.96
12302--12519	103	2.1	103	93	0	373	27	12	23	36	1.91
12526--12602	23	3.3	23	88	1	109	25	18	20	35	1.95
15347--15409	11	5.9	11	69	14	51	57	3	1	38	1.24
15978--16023	14	3.3	14	81	0	56	45	23	2	28	1.65
15978--16031	28	1.9	28	88	0	81	46	24	1	27	1.63
15978--16031	14	3.9	14	77	0	54	46	24	1	27	1.63
18089--18188	11	8.7	11	72	12	76	27	23	21	29	1.99
18092--18188	34	2.8	34	77	10	99	27	22	20	28	1.99
21933--21977	16	2.8	16	96	0	81	17	35	4	42	1.70
25819--25875	30	1.9	30	96	0	105	35	0	33	31	1.58
26319--26380	32	1.9	32	90	0	97	48	19	14	17	1.81
34619--34669	18	2.8	17	82	11	57	66	1	0	31	1.03
33720--34996	640	2.0	639	89	3	1935	39	18	10	32	1.84
36832--37129	103	2.9	102	82	6	359	31	17	14	36	1.90
37036--37251	67	3.2	67	89	3	328	30	18	13	37	1.90
38310--38353	11	4.0	11	80	11	54	18	0	18	63	1.31
39417--39457	22	1.9	21	85	5	55	41	19	4	34	1.73
40123--40197	35	2.1	35	87	0	105	34	28	26	10	1.90
40275--40365	24	3.8	24	83	2	112	37	18	17	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40287--40349	23	2.7	24	90	2	101	36	22	17	23	1.95
42646--42703	27	2.1	27	81	18	66	24	24	36	15	1.94
42681--42742	13	4.3	13	72	20	52	16	20	45	17	1.86
42681--42746	31	2.1	32	88	2	98	15	19	46	18	1.83
44373--44419	18	2.7	18	80	3	60	36	8	27	27	1.86
47924--48001	40	2.0	40	87	2	113	35	11	12	39	1.80
58888--58939	20	2.5	21	81	6	70	25	17	26	30	1.97
63042--63066	2	12.5	2	100	0	50	52	0	0	48	1.00
65634--65716	29	2.8	29	92	1	139	43	9	14	32	1.78
70384--70466	29	2.8	29	92	1	139	43	9	14	32	1.78
73956--73993	20	2.0	19	90	10	60	47	10	23	18	1.79
73955--73999	20	2.6	16	80	19	54	44	11	22	22	1.84
76730--76764	18	1.9	18	88	0	52	20	22	34	22	1.97
78033--78085	21	2.5	21	100	0	106	45	5	24	24	1.75
78638--78670	12	2.8	12	90	0	57	42	0	48	9	1.35
81234--81383	78	1.9	78	90	2	239	30	20	20	29	1.97
86007--86035	2	14.5	2	100	0	58	51	0	0	48	1.00
88614--88692	22	3.6	21	80	16	97	27	18	20	32	1.96
88614--88699	44	2.0	44	90	4	138	26	20	20	31	1.98
89984--90109	48	2.7	47	80	13	129	30	16	22	30	1.96
90081--90131	19	2.7	19	96	0	93	29	15	21	33	1.94
92765--92840	22	3.5	22	100	0	152	30	22	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95016--95141	61	2.1	61	100	0	252	39	15	14	30	1.87
98567--98726	65	2.5	65	80	10	170	30	16	21	31	1.95
98567--98774	65	3.2	64	71	17	169	27	16	23	32	1.96
101269--101298	13	2.2	14	94	5	53	40	13	26	20	1.89
101468--101502	3	11.7	3	100	0	70	0	0	31	68	0.90
101715--101867	22	7.0	22	85	1	191	28	20	22	28	1.99
101715--101867	44	3.5	44	87	4	211	28	20	22	28	1.99
109919--109991	21	3.5	21	92	3	121	32	8	26	32	1.86
125315--125353	20	1.9	20	84	5	51	10	2	17	69	1.28
125399--125443	19	2.4	19	92	0	72	31	8	28	31	1.88
126262--126308	23	2.1	22	88	11	69	14	4	6	74	1.17
134705--134743	20	2.0	20	89	0	60	33	10	23	33	1.88
142628--142687	26	2.3	27	77	8	70	61	3	0	35	1.12
142642--142682	20	2.0	20	85	0	55	68	0	0	31	0.90
150981--151017	18	2.1	17	90	5	56	51	0	2	45	1.15
151026--151066	16	2.5	17	80	11	50	78	2	0	19	0.87
158049--158074	6	4.3	6	100	0	52	34	0	50	15	1.45
158462--158506	15	2.8	15	86	10	54	44	0	11	44	1.39
160833--160884	20	2.6	20	93	0	86	25	5	32	36	1.80

Tables:   1

The End!