genome.fa.s1373.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001373.1 Hibiscus syriacus cultivar Beakdansim tig00002685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153372

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3073--3126	24	2.3	23	78	15	56	38	5	1	53	1.35
3320--3367	24	2.0	23	84	11	62	47	0	6	45	1.27
6936--6970	18	1.9	18	94	0	61	20	22	28	28	1.98
6928--6990	22	3.0	22	73	17	71	28	20	23	26	1.99
14015--14077	22	3.0	22	73	17	62	25	20	25	28	1.99
19246--19292	22	2.1	22	92	0	76	21	21	6	51	1.70
20711--20751	20	2.0	20	90	0	64	29	41	21	7	1.80
25412--25472	23	2.7	22	80	7	68	22	31	18	27	1.97
27438--27474	16	2.3	16	90	0	56	18	2	27	51	1.60
29029--29054	2	13.0	2	100	0	52	50	0	0	50	1.00
30799--30849	22	2.3	22	100	0	102	45	13	0	41	1.44
33860--33916	2	28.5	2	96	0	105	50	1	0	47	1.11
41612--41636	11	2.3	11	100	0	50	8	28	32	32	1.86
42298--42389	3	30.0	3	80	4	103	58	1	2	38	1.17
42520--42695	76	2.3	76	92	2	291	35	21	20	22	1.96
42642--42734	31	3.2	31	65	20	90	37	22	18	21	1.94
42636--42752	57	2.0	58	95	1	209	35	21	19	23	1.96
42561--42828	133	2.0	133	95	1	484	35	21	19	23	1.96
42693--43293	76	7.9	76	94	1	1033	34	21	19	23	1.96
43234--43608	185	2.0	185	97	0	714	37	14	15	32	1.88
44160--44232	22	3.3	22	80	3	92	42	13	8	35	1.74
46737--47076	114	3.0	114	94	0	581	30	19	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49672--49701	2	15.0	2	100	0	60	50	0	0	50	1.00
54658--54682	11	2.3	11	100	0	50	8	28	32	32	1.86
55344--55429	3	28.0	3	81	4	100	59	1	1	38	1.13
55339--55435	15	6.3	15	72	13	72	57	1	2	39	1.17
55560--55735	76	2.3	76	92	2	291	35	21	20	22	1.96
55682--55774	31	3.2	31	65	20	90	37	22	18	21	1.94
55676--55792	57	2.0	58	95	1	209	35	21	19	23	1.96
55601--55868	133	2.0	133	94	1	475	35	21	19	23	1.96
55733--56333	76	7.9	76	94	1	1024	34	21	19	23	1.96
56274--56649	185	2.0	186	97	0	718	37	14	15	31	1.88
57200--57274	22	3.4	22	81	3	96	41	14	8	36	1.76
59777--60116	114	3.0	114	94	0	581	30	19	15	34	1.93
68615--68639	11	2.3	11	100	0	50	8	28	32	32	1.86
69301--69392	3	30.0	3	84	4	121	60	1	0	38	1.04
72140--72185	20	2.4	19	82	7	58	28	21	26	23	1.99
74259--74365	45	2.3	46	87	7	148	28	17	22	30	1.97
78011--78046	17	2.1	17	89	0	54	33	19	19	27	1.96
79103--79150	22	2.2	22	96	0	87	43	4	25	27	1.72
80419--80457	2	18.5	2	84	10	51	43	0	7	48	1.31
80802--80847	24	1.9	24	82	8	58	26	15	17	41	1.88
81109--81201	2	46.5	2	87	4	134	51	1	1	46	1.15
84511--84557	21	2.2	22	84	3	60	27	0	29	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85158--85226	2	34.5	2	100	0	138	50	0	0	49	1.00
86390--86420	2	15.5	2	100	0	62	51	0	0	48	1.00
92149--93027	106	8.3	106	97	0	1616	23	17	25	33	1.96
106450--106477	12	2.3	12	100	0	56	50	0	0	50	1.00
106683--106808	48	2.6	50	79	5	132	24	11	15	47	1.79
106970--107002	16	2.1	16	88	5	50	63	0	3	33	1.10
109004--109053	3	17.3	3	80	15	61	66	0	0	34	0.92
109004--109053	16	3.5	15	82	15	61	66	0	0	34	0.92
112340--112370	14	2.3	14	94	5	55	61	0	19	19	1.35
112409--112508	29	3.6	28	78	8	96	50	9	8	33	1.63
112591--112681	28	3.3	27	83	14	114	49	12	8	29	1.70
115420--115479	24	2.5	24	86	0	84	16	15	36	31	1.90
117894--117922	14	2.1	14	93	6	51	34	10	0	55	1.34
120011--120135	31	4.0	31	93	2	207	37	22	20	20	1.94
120939--120983	21	2.1	21	87	0	63	15	24	28	31	1.96
132776--132839	22	2.9	22	97	0	119	25	21	26	26	2.00
137775--137935	81	2.0	81	80	7	184	27	22	13	36	1.91
138453--138768	45	7.0	45	82	1	321	30	20	9	39	1.85
138470--138768	135	2.2	135	83	2	368	30	20	10	38	1.86
138488--138805	45	7.1	44	82	5	135	30	21	10	38	1.86
138469--138805	90	3.8	89	74	9	283	30	20	10	38	1.86
138557--138805	135	1.8	133	80	7	297	30	22	10	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143965--144318	45	7.9	45	84	3	383	30	20	9	38	1.86
144747--144939	96	2.0	95	85	5	255	32	24	13	29	1.94
149868--150124	45	5.7	45	90	0	336	29	21	9	39	1.85
150058--150291	79	3.0	79	90	0	342	29	25	10	34	1.89

Tables:   1

The End!