genome.fa.s1374.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001374.1 Hibiscus syriacus cultivar Beakdansim tig00002686_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68510

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--90	40	1.9	40	86	0	107	27	25	17	30	1.97
889--917	3	9.7	3	100	0	58	0	0	31	68	0.89
2883--2944	18	3.3	18	86	4	70	14	19	24	41	1.88
2892--2956	20	3.3	20	87	4	89	15	18	24	41	1.89
7806--7847	15	2.6	16	82	17	52	61	0	4	33	1.17
12853--12893	22	1.9	21	90	5	64	73	2	0	24	0.96
18671--18737	24	2.8	24	83	2	80	76	0	7	16	1.01
18666--18748	4	20.2	4	73	16	55	73	0	8	18	1.07
18754--18784	2	15.5	2	100	0	62	51	0	0	48	1.00
19057--19084	2	14.0	2	100	0	56	50	0	0	50	1.00
19636--19739	37	2.8	37	91	0	145	29	16	14	39	1.88
20470--21564	106	10.3	106	92	0	1713	23	18	24	33	1.96
23135--23210	19	3.9	19	78	13	75	2	13	5	78	1.02
23149--23188	18	2.2	19	90	4	64	0	15	5	80	0.88
23149--23217	29	2.3	30	82	9	88	1	14	5	78	1.01
27609--27677	4	17.0	4	72	14	52	71	0	10	18	1.14
27751--27818	29	2.3	30	77	5	77	72	7	0	20	1.09
27971--28001	2	15.5	2	93	0	53	51	0	0	48	1.00
28538--28640	37	2.8	37	87	0	143	29	14	14	41	1.85
29289--29333	3	16.0	3	82	13	60	31	0	0	68	0.89
29288--29344	18	3.1	19	83	11	66	29	0	0	70	0.88
29354--29458	38	2.7	39	80	16	137	35	19	0	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29640--29677	18	2.1	18	90	0	58	73	0	0	26	0.83
35784--35816	16	2.1	16	94	0	57	57	21	12	9	1.62
35883--35973	10	9.7	10	67	25	65	58	20	12	8	1.60
35887--35967	16	5.1	16	93	0	144	58	22	12	7	1.59
36752--36801	24	2.1	24	100	0	100	60	24	8	8	1.52
37526--37573	22	2.0	23	88	11	71	50	0	0	50	1.00
41628--41767	29	4.9	30	72	11	105	40	19	3	36	1.69
41707--41761	28	2.0	28	85	0	74	45	21	1	30	1.62
41810--41839	13	2.3	13	100	0	60	13	23	46	16	1.82
41816--41855	18	2.3	17	95	4	71	10	22	50	17	1.76
41810--41876	30	2.2	31	86	2	91	17	20	43	17	1.88
43685--43728	23	1.9	23	81	9	54	20	6	4	68	1.31
44286--44311	2	13.0	2	100	0	52	50	0	0	50	1.00
44659--44736	41	1.9	41	82	10	97	42	5	14	38	1.67
47043--47086	17	2.6	17	77	0	52	59	0	0	40	0.98
49189--49262	30	2.5	31	77	6	80	35	21	6	36	1.80
50212--50270	30	2.0	30	83	6	75	33	20	6	38	1.79
51270--51329	9	6.9	8	78	14	57	1	18	1	78	0.92
51289--51329	6	6.8	6	88	0	55	0	21	0	78	0.76
51292--51326	3	11.7	3	87	0	52	0	25	0	74	0.82
51289--51329	12	3.4	12	89	0	64	0	21	0	78	0.76
53884--54148	131	2.0	131	97	0	503	38	16	9	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60472--60544	23	3.3	22	69	11	69	21	21	10	45	1.83
60455--60564	43	2.6	43	86	2	150	18	20	14	47	1.83
61463--61502	20	2.1	19	86	13	55	35	20	10	35	1.86
64128--64179	20	2.7	20	85	8	72	28	17	13	40	1.87
67856--67889	17	2.0	17	88	0	50	64	2	5	26	1.30

Tables:   1

The End!