Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001375.1 Hibiscus syriacus cultivar Beakdansim tig00002687_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71592

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3133--3217
28
3.0
28
92
0
143
24
15
27
32
1.95
5579--5627
16
3.1
16
77
16
57
30
0
28
40
1.57
6280--6320
13
3.1
13
89
3
55
75
0
24
0
0.80
18388--18457
2
35.0
2
100
0
140
50
0
0
50
1.00
19845--19875
14
2.1
15
94
5
55
67
0
0
32
0.91
19832--19876
14
2.9
16
78
18
51
68
2
0
28
1.01
20085--20112
5
5.6
5
100
0
56
21
0
0
78
0.75
23698--23760
21
3.0
21
81
2
65
31
31
9
26
1.88
26152--26218
21
3.2
21
65
0
53
40
23
11
23
1.88
27092--27132
19
2.2
19
86
4
57
36
12
24
26
1.91
31216--31262
24
2.0
23
95
4
85
57
0
12
29
1.36
31304--31333
5
5.8
5
92
7
51
80
0
0
20
0.72
31304--31333
11
2.9
10
90
9
51
80
0
0
20
0.72
32582--32622
3
14.3
3
80
10
50
58
0
4
36
1.20
32582--32622
14
2.9
14
88
0
64
58
0
4
36
1.20
32584--32622
17
2.3
17
91
8
62
58
0
5
35
1.20
32924--33849
177
5.2
176
90
1
1415
29
19
17
33
1.95
33866--33947
42
2.0
42
87
0
119
32
23
19
24
1.97
35419--35511
41
2.2
41
80
12
102
32
22
10
34
1.89
35521--35716
52
3.8
52
91
2
279
22
21
17
37
1.94
37181--37313
17
7.3
18
75
19
91
3
12
0
82
0.84
37181--37308
6
20.5
6
75
20
72
3
12
0
82
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37195--37309
20
5.8
20
78
14
80
3
12
0
84
0.75
37214--37311
1
98.0
1
73
0
79
3
10
0
86
0.67
37219--37310
8
11.6
8
82
11
93
3
9
0
86
0.66
37195--37313
28
4.4
26
80
11
116
3
12
0
84
0.75
37207--37311
10
10.5
10
79
17
96
2
11
0
85
0.69
37181--37300
7
17.4
7
76
16
92
4
12
0
82
0.85
37181--37311
19
7.1
19
75
14
105
3
12
0
83
0.82
39708--39797
42
2.1
42
95
0
162
24
11
16
47
1.79
44038--44069
13
2.3
15
89
10
50
53
0
9
37
1.34
45347--45415
3
24.3
3
88
8
101
65
0
1
33
1.02
45348--45414
22
3.0
23
91
6
102
67
0
1
31
1.00
45347--45415
25
2.7
27
86
10
101
65
0
1
33
1.02
49477--49508
15
2.1
16
94
5
57
68
0
0
31
0.90
49476--49511
15
2.4
14
86
13
54
72
0
0
27
0.85
61385--61418
12
2.7
13
86
9
52
44
8
5
41
1.60
61523--61565
19
2.4
18
81
11
52
41
6
2
48
1.43
61841--61893
20
2.7
20
96
0
97
24
26
20
28
1.99
66131--66169
17
2.3
17
100
0
78
5
28
0
66
1.12
66786--66824
17
2.3
17
100
0
78
66
0
28
5
1.12

Tables:   1

The End!