Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001376.1 Hibiscus syriacus cultivar Beakdansim tig00002688_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67224

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21616--21737
8
14.4
8
76
16
88
78
0
18
1
0.88
21605--21656
19
2.7
19
85
11
63
80
3
11
3
0.97
21618--21737
13
9.2
13
73
15
90
78
0
19
1
0.89
21637--21735
7
12.9
8
77
13
75
77
0
21
1
0.82
21617--21745
34
4.0
32
77
13
122
77
0
20
1
0.90
21633--21745
14
8.1
14
72
14
67
77
0
21
0
0.82
22378--22439
28
2.2
28
88
0
88
37
33
6
22
1.80
23754--24183
43
10.0
42
76
5
360
26
13
30
29
1.94
23751--24174
86
4.9
85
78
7
444
26
13
30
29
1.94
23753--24220
258
1.8
257
91
1
776
27
13
29
30
1.94
24305--24644
90
3.8
90
94
0
601
25
19
22
32
1.97
24763--24876
42
2.7
42
79
4
133
28
21
21
28
1.98
24997--25109
36
3.1
36
87
6
156
29
23
11
36
1.90
30736--30789
15
3.7
15
73
22
53
48
0
5
46
1.25
45015--45054
21
1.9
21
89
0
62
30
15
17
37
1.90
45473--45556
44
1.9
44
82
0
105
27
19
21
32
1.97
48254--48307
18
3.2
18
79
15
69
31
14
0
53
1.41
48262--48290
15
1.9
15
100
0
58
37
13
0
48
1.43
48287--48335
24
2.0
25
84
11
66
38
20
0
40
1.53
49341--49557
40
5.3
40
66
15
104
34
22
20
23
1.97
49331--49841
125
4.0
125
80
5
515
34
20
19
25
1.96
50480--50543
3
21.7
3
76
17
55
28
0
0
71
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50480--50523
23
1.9
23
85
0
61
27
0
0
72
0.85
50490--50537
19
2.6
18
81
12
53
31
0
0
68
0.90
55866--55907
18
2.3
19
84
12
52
59
21
0
19
1.38
55835--55889
28
1.9
29
88
3
85
60
18
3
18
1.51
58517--58569
15
3.6
15
76
2
54
64
3
9
22
1.40
58623--58700
31
2.4
33
78
12
88
65
2
8
23
1.34
58559--58806
85
2.9
83
81
5
257
65
3
11
19
1.40
58558--58806
84
2.9
84
80
7
279
65
4
11
19
1.41
58703--58864
90
1.9
87
80
8
195
63
4
12
19
1.45
60502--60650
44
3.4
44
74
7
126
34
17
18
29
1.94
60777--61079
110
2.7
110
80
7
312
26
26
15
32
1.96
62643--62695
13
4.3
12
79
9
54
62
1
16
18
1.42
62649--62695
13
3.7
13
82
2
60
61
2
14
21
1.43
63139--63184
23
2.0
23
83
8
58
56
0
6
36
1.25
65982--66080
50
2.0
48
96
3
180
36
26
11
26
1.90

Tables:   1

The End!