Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001377.1 Hibiscus syriacus cultivar Beakdansim tig00002689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78806

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2692--2739
20
2.6
18
78
18
53
14
6
0
79
0.92
2774--2840
33
2.1
32
82
2
80
46
7
5
40
1.57
2837--2951
25
4.2
26
74
20
101
44
3
13
39
1.60
2833--2951
56
2.1
55
80
9
134
45
3
12
38
1.59
2900--3065
33
4.8
35
81
10
175
46
2
5
45
1.39
2900--3065
68
2.4
69
86
7
212
46
2
5
45
1.39
9282--9996
169
4.2
169
87
1
986
33
23
19
24
1.97
9282--9996
85
8.4
85
87
3
922
33
23
19
24
1.97
9288--10079
85
9.4
85
83
5
505
33
22
18
24
1.97
10868--10965
37
2.8
35
80
11
112
42
8
9
39
1.66
10867--10965
36
2.8
36
80
10
107
42
8
9
40
1.66
10897--11031
64
2.1
66
87
5
195
41
5
11
42
1.63
10961--11190
36
6.4
36
80
13
244
43
2
7
46
1.44
10922--11187
38
7.6
33
77
16
147
44
2
8
44
1.47
11220--11269
12
3.8
13
75
17
50
18
2
2
78
0.95
12908--12932
2
12.5
2
100
0
50
52
0
0
48
1.00
14681--14713
14
2.4
14
90
5
50
60
3
3
33
1.27
18479--18584
48
2.2
48
84
0
131
49
17
16
16
1.81
18479--18584
24
4.4
24
81
0
113
49
17
16
16
1.81
23150--23234
24
3.5
24
80
6
82
50
18
12
17
1.77
23146--23251
48
2.2
48
81
0
113
50
17
14
16
1.77
23147--23251
24
4.4
24
75
8
79
50
18
14
17
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28805--28831
2
13.5
2
100
0
54
48
0
0
51
1.00
33930--33998
24
2.9
24
97
0
129
47
0
33
18
1.49
33930--33988
6
9.8
6
84
0
55
49
0
33
16
1.47
33939--33998
3
20.0
3
92
0
57
45
0
33
21
1.52
35641--35674
17
1.9
18
88
5
52
50
0
8
41
1.34
42689--43128
29
15.2
29
72
1
238
43
10
10
34
1.75
42689--43112
87
4.9
87
88
3
581
43
11
10
34
1.75
43938--44094
70
2.2
70
84
5
219
27
19
25
28
1.98
44500--44555
18
3.0
19
87
7
71
23
26
19
30
1.98
60437--60534
31
3.1
30
79
7
106
24
13
6
56
1.60
60607--60675
30
2.3
30
92
0
111
47
10
10
31
1.70
61392--61434
16
2.6
17
88
7
70
25
2
0
72
0.97
71068--71135
35
1.9
35
93
0
118
27
5
25
41
1.78
71399--71435
17
2.2
17
86
13
51
37
8
0
54
1.30
73188--73225
20
1.9
20
94
0
67
57
0
5
36
1.21

Tables:   1

The End!