Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001378.1 Hibiscus syriacus cultivar Beakdansim tig00002690_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42918

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1696--1815
29
4.2
28
71
12
93
40
21
3
35
1.70
1677--1815
28
5.0
27
71
9
91
39
20
3
36
1.70
1855--1909
17
4.0
13
76
21
58
16
21
45
16
1.85
1861--1899
17
2.3
17
100
0
78
10
23
48
17
1.78
1855--1920
30
2.2
30
83
5
80
18
21
42
18
1.89
1915--1964
10
5.1
10
74
11
50
38
26
20
16
1.92
3724--3767
23
1.9
23
81
9
54
20
6
4
68
1.31
4687--4764
41
1.9
41
82
10
97
42
5
14
38
1.67
7072--7113
16
2.6
17
77
11
52
57
0
0
42
0.99
9209--9282
30
2.5
31
77
6
80
35
21
6
36
1.80
10230--10288
30
2.0
30
83
6
75
33
20
6
38
1.79
11290--11349
9
6.9
8
78
14
57
1
18
1
78
0.92
11309--11349
6
6.8
6
88
0
55
0
21
0
78
0.76
11312--11346
3
11.7
3
87
0
52
0
25
0
74
0.82
11309--11349
12
3.4
12
89
0
64
0
21
0
78
0.76
13901--14165
131
2.0
131
97
0
503
38
16
9
35
1.82
20504--20576
23
3.3
22
69
11
69
21
21
10
45
1.83
20487--20582
43
2.2
43
88
3
140
20
19
14
44
1.86
20542--20599
23
2.5
23
74
0
62
13
25
12
48
1.77
21511--21549
20
2.0
19
85
14
53
35
20
10
33
1.86
24194--24245
20
2.7
20
85
8
72
28
17
13
40
1.87
27990--28024
18
1.9
18
88
0
52
65
2
5
25
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28045--28168
30
4.2
31
69
20
86
60
4
12
23
1.48
28656--28897
57
4.3
57
88
4
330
42
17
8
32
1.79
30244--30309
28
2.4
28
82
5
80
18
6
37
37
1.75
41566--41634
20
3.5
18
81
14
75
37
21
10
30
1.87

Tables:   1

The End!