Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001379.1 Hibiscus syriacus cultivar Beakdansim tig00002692_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60789

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19838--19886
19
2.5
20
83
3
55
24
22
20
32
1.98
22425--22479
20
2.7
21
77
5
58
41
16
21
20
1.90
22468--22582
20
5.7
20
84
6
124
31
26
20
22
1.98
22465--22596
41
3.2
41
81
6
151
34
25
18
21
1.96
22731--22764
12
2.9
12
86
4
52
17
41
5
35
1.74
23320--23373
24
2.2
24
90
0
81
22
16
20
40
1.91
25840--25957
20
5.9
20
94
0
209
37
23
22
16
1.93
25976--26040
19
3.7
19
86
13
95
13
21
18
46
1.84
26180--26216
14
2.6
14
86
0
56
48
21
0
29
1.50
28083--28150
20
3.5
20
81
2
75
39
23
22
14
1.91
28139--28197
14
3.9
14
76
20
64
49
23
16
10
1.77
28123--28214
33
2.8
33
98
0
175
47
21
18
11
1.80
28123--28219
19
5.6
19
71
22
97
46
21
19
12
1.83
28257--28300
20
2.2
20
84
4
54
18
22
20
38
1.93
30201--30259
20
3.0
20
87
0
73
42
22
18
16
1.89
30768--30839
20
3.6
20
88
0
99
27
20
26
25
1.99
30848--30897
20
2.5
20
96
0
91
26
24
22
28
1.99
30747--30881
41
3.3
41
74
8
132
25
20
22
31
1.98
30788--30904
61
1.9
61
82
0
144
24
19
22
33
1.97
30931--30983
21
2.5
22
81
6
74
33
18
26
20
1.96
34101--34151
22
2.3
22
93
0
84
31
25
25
17
1.97
34109--34153
22
2.0
22
100
0
90
26
26
26
20
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34371--34429
30
1.9
31
86
3
84
33
22
6
37
1.80
34444--34515
29
2.5
29
90
0
108
38
12
11
37
1.79
34819--34967
66
2.2
66
88
3
210
18
28
26
26
1.98
34947--34989
21
2.0
21
86
0
59
16
25
27
30
1.97
34819--34989
66
2.6
65
85
6
193
18
28
25
26
1.98
41016--41082
22
3.0
22
100
0
134
26
26
26
19
1.99
41302--41360
30
1.9
31
86
3
84
33
22
6
37
1.80
41375--41446
29
2.5
29
90
0
108
38
12
11
37
1.79
41749--41899
67
2.3
66
88
2
212
18
28
27
25
1.98
41879--41921
21
2.0
21
86
0
59
16
25
27
30
1.97
41750--41921
67
2.6
66
85
5
195
18
28
26
26
1.98
44761--44798
19
2.0
20
89
5
60
21
26
2
50
1.62
52475--52526
26
2.0
26
100
0
104
23
11
19
46
1.82
60038--60104
3
24.0
3
85
14
99
65
0
0
34
0.93
60046--60101
11
5.1
11
87
12
80
66
0
0
33
0.92
60038--60104
14
4.9
14
89
10
95
65
0
0
34
0.93

Tables:   1

The End!