Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000138.1 Hibiscus syriacus cultivar Beakdansim tig00000251_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59562

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20--332
125
2.5
125
84
6
384
26
28
18
25
1.98
1233--1276
21
2.2
21
92
8
74
25
13
9
52
1.70
5953--5977
2
12.5
2
100
0
50
52
48
0
0
1.00
7328--7398
34
2.1
33
86
2
97
32
21
8
38
1.83
7711--7794
33
2.5
34
80
3
100
33
17
13
35
1.89
7901--7986
35
2.5
35
81
10
106
31
19
12
36
1.90
7902--8028
61
2.0
65
81
10
154
32
19
12
35
1.90
8173--8561
123
3.0
123
76
11
365
26
26
18
27
1.98
14618--14790
94
1.8
94
83
9
228
31
15
23
30
1.95
14806--14847
22
1.9
22
95
0
75
38
14
21
26
1.91
14645--14857
95
2.3
93
79
11
229
33
14
23
28
1.94
14803--14857
22
2.7
20
83
10
74
34
14
25
25
1.94
15262--15607
45
7.7
43
84
6
302
38
9
22
29
1.85
15262--15607
90
3.8
91
82
4
382
38
9
22
29
1.85
15262--15599
135
2.5
135
86
4
441
38
9
22
29
1.86
17599--17713
59
1.9
59
82
3
142
30
26
5
37
1.79
21278--21312
8
4.2
8
85
7
52
77
0
8
14
0.99
21261--21339
25
3.1
25
77
14
72
78
1
6
13
1.00
21236--21338
42
2.5
42
81
9
120
74
0
7
16
1.09
21244--21296
21
2.5
23
76
14
60
71
0
11
16
1.13
21244--21299
20
2.7
21
76
15
62
71
0
10
17
1.14
21240--21304
34
1.9
34
84
12
89
73
0
9
16
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21267--21339
26
2.8
26
82
14
80
78
1
6
13
1.02
22067--22101
2
17.5
2
100
0
70
48
0
0
51
1.00
22566--22609
4
11.2
4
81
13
56
75
2
0
22
0.92
22573--22621
16
3.1
16
85
5
64
75
4
0
20
0.96
22570--22612
7
5.7
7
81
13
50
74
2
0
23
0.93
22622--23318
37
18.9
37
70
20
175
45
6
2
45
1.42
22674--22742
29
2.3
31
75
14
72
44
5
1
47
1.35
22746--23359
36
17.2
34
72
20
256
45
5
2
45
1.41
22893--22943
25
2.0
26
92
3
86
49
7
1
41
1.43
22968--23074
45
2.4
45
87
7
173
47
5
1
44
1.37
23268--23330
12
5.3
12
76
3
74
49
7
0
42
1.32
31998--32260
129
2.0
129
100
0
526
24
29
20
25
1.99
35445--35478
17
2.0
17
88
0
50
41
17
14
26
1.88
36263--36322
23
2.8
21
79
18
70
46
16
13
23
1.82
37538--37612
31
2.4
31
100
0
150
17
10
18
53
1.72
41339--41473
63
2.1
63
86
0
180
32
21
20
25
1.97
42184--42244
23
2.7
23
89
0
95
21
26
24
27
1.99
42698--42725
2
14.0
2
100
0
56
50
0
0
50
1.00
48467--48521
20
2.5
23
85
11
71
34
20
25
20
1.96
49124--49182
23
2.6
23
86
0
91
16
25
28
28
1.97
56315--56352
16
2.4
16
100
0
76
28
7
18
44
1.78
59084--59120
18
2.0
19
89
5
58
29
5
8
56
1.51

Tables:   1

The End!