genome.fa.s1381.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001381.1 Hibiscus syriacus cultivar Beakdansim tig00002695_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64160

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5049--5206	36	4.4	34	85	10	183	44	2	5	47	1.40
5144--5203	11	5.2	11	73	11	57	45	0	3	51	1.17
5884--5947	20	3.2	20	84	4	76	35	18	21	23	1.95
5896--5983	40	2.2	40	81	4	97	29	25	20	25	1.99
5916--5983	20	3.4	20	93	0	109	26	27	20	25	1.99
6802--6848	24	2.0	24	95	0	85	21	21	21	36	1.96
7030--7068	3	13.0	3	88	0	60	71	0	28	0	0.86
7030--7069	15	2.7	15	100	0	80	72	0	27	0	0.85
7060--7096	14	2.6	14	91	4	56	51	21	21	5	1.68
9402--9430	13	2.2	13	100	0	58	27	6	24	41	1.80
9469--9776	54	5.6	54	70	13	189	35	21	17	25	1.95
9469--9727	40	6.9	40	68	17	153	35	20	17	26	1.95
9520--9776	20	13.8	20	71	14	174	34	21	18	24	1.96
9596--9767	74	2.3	74	91	0	281	35	20	19	25	1.95
9511--9727	94	2.3	94	84	1	274	34	21	17	25	1.96
9625--9761	34	3.9	34	75	11	139	36	21	19	22	1.95
9770--9823	20	2.7	20	88	5	74	12	18	25	42	1.86
9944--9982	14	2.8	14	84	0	51	48	12	0	38	1.42
11392--11483	42	2.2	42	80	3	105	22	17	38	21	1.93
11969--12035	20	3.5	18	82	11	80	37	26	17	17	1.93
11980--12035	20	2.8	20	91	0	85	37	25	17	19	1.94
12078--12165	20	4.4	20	91	0	131	18	17	26	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12313--12362	18	2.8	18	93	0	91	44	6	18	32	1.74
14095--14168	20	3.7	20	83	0	76	45	24	14	14	1.83
14561--14617	22	2.6	22	85	0	78	17	19	40	22	1.91
14784--14899	20	5.8	20	89	0	151	23	20	25	30	1.99
14783--14913	40	3.3	40	82	0	163	24	20	24	30	1.99
14783--14940	20	7.9	20	83	2	147	25	20	22	31	1.98
14932--14983	21	2.4	22	74	6	61	36	19	25	19	1.95
15735--15822	3	29.3	3	100	0	176	67	0	0	32	0.91
23868--23906	20	1.9	21	85	15	55	69	2	0	28	1.02
24708--24744	19	1.9	19	94	0	65	0	16	5	78	0.93
25239--25366	3	42.7	3	90	0	202	61	0	3	35	1.12
25683--26350	113	5.9	113	90	2	966	29	19	13	37	1.89
27041--27409	84	4.4	84	97	0	702	36	21	14	27	1.92
28160--28201	19	2.2	20	91	4	68	52	11	4	30	1.59
28535--28611	14	5.2	14	78	18	77	2	20	0	76	0.90
28535--28611	30	2.6	30	82	13	97	2	20	0	76	0.90
28540--28608	16	4.4	16	80	8	72	2	18	0	78	0.88
39196--39232	15	2.7	15	88	12	53	62	8	5	24	1.44
39223--39273	18	2.9	17	75	16	50	72	1	0	25	0.95
39914--39954	20	2.0	21	85	4	57	58	2	2	36	1.24
39997--40035	20	1.9	21	85	15	55	69	2	0	28	1.02
40844--40878	18	1.9	18	100	0	70	0	17	2	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41373--41506	3	44.7	3	90	0	214	61	0	2	35	1.11
42705--42805	50	2.0	50	96	0	184	25	10	26	36	1.89
46165--46211	13	3.7	13	80	5	60	21	14	2	61	1.43
46165--46217	13	4.3	12	83	4	54	18	16	1	62	1.42
47436--47476	19	2.1	20	90	4	66	56	2	7	34	1.40
47446--47487	19	2.2	19	87	8	59	59	7	7	26	1.50
47817--48130	110	2.8	110	82	7	276	33	15	25	25	1.95
48300--48405	44	2.4	43	82	4	124	30	16	17	34	1.93
50105--50354	85	2.9	86	79	7	278	19	11	3	66	1.38
53028--53081	23	2.3	24	84	9	67	22	3	22	51	1.63
58354--58409	3	18.7	3	78	14	62	69	0	0	30	0.89
58354--58409	17	3.1	17	82	12	67	69	0	0	30	0.89
58376--58417	20	2.1	20	86	0	57	76	2	0	21	0.90
59323--59539	40	5.3	41	67	15	117	23	19	22	34	1.96
59041--59549	125	4.0	125	78	6	470	25	18	20	35	1.95
60548--60598	15	3.1	17	80	13	70	54	0	13	31	1.39

Tables:   1

The End!