Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001382.1 Hibiscus syriacus cultivar Beakdansim tig00002697_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88965

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10216--10275
29
2.0
30
93
3
104
33
16
6
43
1.74
12645--12711
26
2.5
27
80
4
100
46
17
16
19
1.85
12683--12717
17
2.0
18
88
5
54
42
17
17
22
1.88
15714--15800
32
2.7
32
87
0
138
29
22
13
33
1.93
15842--15938
48
2.0
47
96
2
176
57
10
11
20
1.62
24203--24287
32
2.7
32
86
0
125
30
22
12
34
1.92
38998--39055
30
1.9
31
82
3
73
51
10
0
37
1.36
41502--41644
29
4.9
27
71
15
81
47
8
0
43
1.38
41626--41653
2
14.0
2
100
0
56
50
0
0
50
1.00
41502--41637
28
4.5
31
67
19
83
47
8
0
42
1.39
42266--42727
255
1.8
255
81
2
577
33
17
16
32
1.93
50464--50514
7
7.4
7
95
4
95
25
29
29
15
1.96
50511--50555
17
2.6
17
100
0
90
17
22
42
17
1.89
50552--50639
9
9.1
10
78
12
103
28
29
23
18
1.98
50550--50639
19
4.7
19
90
6
137
27
28
25
17
1.98
57751--57816
7
9.6
7
96
3
125
27
28
28
15
1.96
57805--57862
17
3.4
17
95
0
98
18
24
39
17
1.92
57856--57926
19
3.7
19
92
1
106
26
29
25
18
1.98
57858--57926
9
7.1
10
76
12
72
27
30
23
18
1.98
60046--60099
20
2.5
22
82
14
69
31
24
14
29
1.95
65754--65809
27
2.1
26
83
9
69
46
8
0
44
1.34
72340--72397
24
2.5
24
80
5
66
48
8
0
43
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72341--72450
46
2.4
46
79
11
111
44
9
0
45
1.41
75385--75433
17
2.9
17
90
6
73
32
6
32
28
1.82
76073--76121
25
2.0
25
83
0
62
77
4
4
14
1.06
76129--76193
18
3.6
19
76
10
57
70
4
7
16
1.28
76130--76219
22
3.9
22
74
14
60
72
3
7
16
1.22
76239--76321
4
19.5
4
73
20
53
72
3
3
20
1.15
76230--76352
62
2.0
62
81
12
146
71
4
4
19
1.21
80391--80431
20
2.0
20
85
9
55
58
0
2
39
1.11
80894--80921
6
4.7
6
100
0
56
67
0
0
32
0.91
81604--81653
21
2.4
21
90
9
77
30
20
22
28
1.98
84492--84570
40
2.0
40
94
0
140
21
16
26
35
1.94
84675--84829
44
3.5
44
88
3
215
39
9
20
30
1.85

Tables:   1

The End!