genome.fa.s1383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001383.1 Hibiscus syriacus cultivar Beakdansim tig00002699_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80217

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128--1245	44	2.7	44	81	1	139	31	19	20	28	1.97
7000--7180	64	2.8	64	87	4	213	32	13	21	33	1.92
7042--7180	64	2.2	64	93	0	233	31	11	23	33	1.90
7582--7698	39	3.0	39	83	6	157	23	13	20	42	1.87
9549--9672	41	3.0	41	83	5	162	30	4	20	44	1.72
11554--11588	12	2.8	12	91	4	52	45	0	8	45	1.34
11557--11594	13	3.0	13	88	3	51	50	2	7	39	1.46
11569--11752	74	2.5	75	86	5	248	46	3	10	38	1.57
11582--11701	37	3.2	37	74	18	131	47	5	10	36	1.60
11568--11736	37	4.6	36	73	16	123	46	4	11	37	1.60
11736--11774	2	19.5	2	100	0	78	51	0	0	48	1.00
11807--11856	22	2.3	22	82	0	64	46	4	6	44	1.47
11829--11881	29	1.9	26	88	11	79	43	0	7	49	1.31
11892--11961	9	8.2	9	77	15	60	37	0	1	61	1.05
11889--11952	14	4.7	14	79	14	71	35	0	0	64	0.94
11889--11952	7	9.7	7	77	20	50	35	0	0	64	0.94
11889--11972	40	2.1	40	82	12	102	35	0	1	63	1.03
16818--16891	24	3.1	24	84	3	78	37	27	12	22	1.90
20755--20798	18	2.4	18	84	0	70	25	18	31	25	1.97
26165--26209	22	2.0	22	86	0	63	42	4	13	40	1.64
28560--28585	12	2.2	12	100	0	52	53	7	15	23	1.67
29730--29781	20	2.6	20	96	0	95	38	26	13	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29837--30030	20	9.6	20	76	8	76	35	25	19	19	1.95
29833--30030	40	5.0	39	81	4	200	35	26	19	19	1.95
29837--30029	60	3.2	60	83	0	251	35	25	19	19	1.95
30409--30479	33	2.2	33	92	0	115	11	22	18	47	1.80
30659--30720	19	3.5	19	75	20	80	9	22	22	45	1.81
30658--30775	33	3.6	33	94	0	209	10	24	20	44	1.82
30661--30768	14	6.5	17	72	25	81	10	24	21	44	1.83
32473--32756	92	3.1	92	95	2	527	23	12	18	45	1.83
32800--32928	19	7.3	19	75	17	125	45	28	17	8	1.77
32836--32928	33	2.8	32	91	4	150	46	27	18	7	1.76
32800--32928	52	2.5	52	74	14	140	45	28	17	8	1.77
32924--33058	19	7.6	19	75	16	128	11	19	23	45	1.82
32946--33002	14	3.7	14	77	20	60	10	21	22	45	1.82
32929--33021	33	2.8	33	95	0	168	10	20	21	47	1.80
34958--34993	14	2.6	14	95	0	63	33	0	22	44	1.53
35100--35201	19	5.6	19	84	13	151	44	17	23	14	1.86
35230--35503	19	15.4	19	81	15	345	14	20	18	46	1.83
35230--35503	52	5.2	53	85	11	277	14	20	18	46	1.83
37785--37809	12	2.1	12	100	0	50	0	28	0	72	0.86
38711--39079	20	18.5	20	85	5	442	20	18	26	34	1.95
40281--40361	42	1.9	43	92	2	137	34	18	19	27	1.95
40142--40466	136	2.4	135	87	2	465	29	22	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40398--41539	215	5.3	215	87	2	1530	32	20	14	32	1.93
41013--41114	42	2.5	41	77	6	107	33	18	18	29	1.95
42827--43079	125	2.0	125	95	1	454	24	26	16	32	1.96
49612--50073	111	4.1	112	91	1	721	46	14	14	25	1.82
49612--50073	223	2.1	224	92	0	755	46	14	14	25	1.82
50949--50996	23	2.1	23	88	0	69	39	14	8	37	1.76
52543--52595	18	2.9	18	85	0	79	22	20	32	24	1.98
58822--58942	64	1.9	64	89	0	188	33	24	18	23	1.96
59334--59477	73	2.0	72	89	8	220	44	4	9	41	1.57
59328--59499	37	4.5	37	78	15	183	43	4	8	43	1.56
59474--59525	22	2.4	22	87	3	70	44	1	5	48	1.38
59558--59611	5	10.8	5	82	9	58	37	0	3	59	1.15
68592--68663	17	4.2	17	78	5	65	38	11	8	41	1.71
70150--70193	20	2.2	20	87	0	61	84	2	6	6	0.86
70520--70563	22	2.0	22	86	0	61	11	0	27	61	1.30
72642--72695	24	2.2	24	83	0	63	33	22	18	25	1.97
72687--72759	23	3.1	23	86	7	94	30	26	20	23	1.99
75362--75397	15	2.4	15	85	0	54	44	0	22	33	1.53

Tables:   1

The End!