genome.fa.s1384.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001384.1 Hibiscus syriacus cultivar Beakdansim tig00002700_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58684

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6423--6484	22	2.9	22	95	2	108	37	19	9	33	1.84
9637--9981	184	1.9	184	95	1	620	34	15	14	36	1.88
11010--11075	33	2.0	33	90	0	105	22	45	0	31	1.53
11112--11194	21	4.0	21	95	0	139	18	28	10	42	1.84
13429--13484	20	2.8	19	78	7	67	19	16	8	55	1.67
13396--13868	181	2.6	182	92	0	768	26	17	14	42	1.87
14220--14358	38	3.7	38	82	4	165	41	2	7	47	1.47
14220--14361	37	3.8	38	83	4	171	42	2	7	47	1.47
20470--21491	509	2.0	509	99	0	1999	35	18	11	34	1.87
25994--26025	16	2.0	16	93	0	55	31	15	25	28	1.96
26000--26042	17	2.6	17	85	3	52	37	18	23	20	1.94
26817--26954	37	3.7	38	76	4	129	42	4	7	45	1.53
30500--30536	3	12.3	3	94	0	65	29	0	2	67	1.04
30640--30704	25	2.6	25	85	4	78	38	16	3	41	1.64
35915--36005	35	2.6	34	91	5	146	42	3	9	43	1.54
35915--36097	72	2.6	69	79	11	190	45	3	10	39	1.57
36269--36314	17	3.0	16	84	15	62	30	0	0	69	0.89
36266--36308	19	2.2	20	91	4	70	30	0	0	69	0.88
38323--38403	20	4.0	20	95	3	135	16	29	37	17	1.91
38323--38402	41	2.0	41	94	0	142	16	30	36	17	1.92
41317--41386	34	2.1	34	89	5	108	21	31	15	31	1.95
41668--41720	21	2.5	21	100	0	106	18	28	33	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41755--41818	21	3.0	21	88	0	92	14	28	37	20	1.91
43068--43105	18	2.1	18	85	9	51	21	0	5	73	1.02
50652--51069	53	7.9	53	87	1	599	36	11	24	27	1.90
50665--51069	105	3.9	105	89	0	596	36	11	24	26	1.90
50652--51069	158	2.6	157	88	0	611	36	11	24	27	1.90
51015--51678	61	11.0	61	89	1	960	37	14	20	27	1.91
56679--57112	53	8.3	53	85	4	549	37	11	22	28	1.90
56680--57112	155	2.8	158	86	3	615	37	12	21	28	1.90
57111--57659	61	9.1	61	87	1	775	37	13	20	27	1.91
57222--57320	33	3.2	33	60	24	77	38	13	22	26	1.90

Tables:   1

The End!