Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001386.1 Hibiscus syriacus cultivar Beakdansim tig00002705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60823

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1537--1700
80
2.1
78
91
2
265
31
18
21
28
1.97
1555--1768
80
2.8
76
82
8
236
33
21
19
26
1.97
1736--1850
37
3.1
37
93
0
185
37
20
18
23
1.94
2047--2095
3
16.3
3
95
0
89
32
2
0
65
1.04
4198--4315
2
59.0
2
100
0
236
50
0
0
50
1.00
6585--6641
18
3.2
18
76
0
60
75
1
8
14
1.11
6586--6646
23
2.6
24
81
5
79
75
1
8
14
1.11
7221--7247
4
6.8
4
100
0
54
77
0
0
22
0.76
10842--11172
131
2.5
131
87
1
450
39
16
11
32
1.84
14927--14975
20
2.3
22
79
10
57
73
4
4
18
1.15
15088--15118
16
1.9
16
100
0
62
38
0
22
38
1.54
15177--15226
17
3.4
17
65
35
51
64
8
0
28
1.22
15180--15224
14
3.3
14
81
6
65
62
8
0
28
1.25
23864--24203
172
2.0
175
91
3
562
32
13
16
38
1.87
24038--24408
198
1.9
197
90
2
593
34
11
14
39
1.83
25769--25827
23
2.6
23
83
0
64
37
23
10
28
1.88
25787--25835
23
2.1
23
88
0
71
36
18
8
36
1.81
25799--25868
11
6.2
11
73
6
59
30
20
15
34
1.93
28002--28056
7
7.9
7
95
0
83
20
0
36
43
1.52
28166--28228
11
5.9
11
73
14
60
39
1
1
57
1.18
34485--34556
3
23.7
3
74
2
63
26
1
4
68
1.16
34535--34559
6
4.2
6
100
0
50
16
0
0
84
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34965--35027
13
5.1
12
77
11
56
73
1
20
4
1.11
34965--35027
6
10.2
6
81
11
56
73
1
20
4
1.11
34968--35044
24
3.1
24
85
7
93
71
2
18
7
1.22
45466--45547
24
3.5
24
83
3
103
28
18
19
34
1.95
45622--45793
57
3.0
57
90
0
263
14
19
29
36
1.92
46276--46318
20
2.0
21
86
8
61
32
4
6
55
1.47
48193--48244
17
3.2
17
75
10
54
50
13
3
32
1.60
48675--48740
34
1.9
34
96
0
123
30
12
10
46
1.75
49875--49957
27
3.2
25
62
18
60
43
16
14
25
1.86
49855--49965
54
2.0
55
98
1
215
44
15
15
25
1.85
53790--53901
19
5.9
19
82
8
111
32
15
7
45
1.73
55150--55181
14
2.3
14
100
0
64
50
6
0
43
1.27
56369--56421
16
3.3
16
70
19
56
54
5
1
37
1.35
59904--59943
18
2.2
18
86
0
53
47
2
2
47
1.29

Tables:   1

The End!