genome.fa.s1387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001387.1 Hibiscus syriacus cultivar Beakdansim tig00002707_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79291

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3128--3168	22	1.9	21	85	5	55	29	39	21	9	1.86
5403--5464	25	2.5	25	97	0	115	30	3	33	32	1.74
5478--5510	17	1.9	17	100	0	66	42	0	24	33	1.55
6968--7172	102	2.0	101	89	0	311	26	13	22	37	1.92
7196--7256	23	2.7	23	92	0	95	18	26	27	27	1.98
17622--17673	14	4.0	14	73	19	58	15	13	13	57	1.65
17609--17674	24	2.7	24	88	4	96	18	13	13	54	1.71
31966--31995	13	2.4	13	94	5	53	43	0	30	26	1.55
35827--35870	19	2.2	20	84	11	56	25	40	20	13	1.89
36186--36243	25	2.3	25	96	0	107	10	48	22	18	1.78
36192--36249	25	2.5	22	82	17	66	12	46	22	18	1.82
40238--40357	59	2.0	59	83	3	152	55	1	7	35	1.38
40238--40363	29	4.3	29	81	7	137	53	2	7	36	1.41
40240--40390	29	5.2	29	79	10	114	55	2	7	34	1.41
44836--44960	31	4.0	31	89	2	171	21	18	22	37	1.94
45233--45280	19	2.8	17	76	14	53	50	0	14	35	1.44
45233--45297	35	1.9	33	84	12	87	50	0	15	33	1.44
45272--45310	18	2.2	17	86	4	51	51	0	23	25	1.49
45780--45821	21	2.0	21	90	0	66	26	21	26	26	1.99
45859--45918	29	2.0	30	90	6	95	33	6	18	41	1.76
46008--46087	21	4.1	21	75	18	91	22	36	27	13	1.92
46014--46085	36	2.0	36	97	0	135	23	33	27	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46035--46064	15	2.0	15	93	0	51	26	30	26	16	1.97
46121--46163	21	2.0	21	100	0	86	13	44	27	13	1.83
46199--46241	21	2.0	21	95	0	77	23	20	27	27	1.99
46269--46308	20	1.9	22	90	10	66	37	40	10	12	1.77
46523--46592	34	2.1	32	89	5	104	31	15	31	21	1.95
46798--46837	20	2.0	20	100	0	80	15	25	25	35	1.94
47472--47519	19	2.5	19	83	12	62	54	4	12	29	1.56
48765--48833	30	2.2	30	82	15	86	34	5	18	40	1.75
48774--48833	29	2.0	30	90	6	95	33	6	18	41	1.76
48923--49001	21	4.0	21	78	18	98	22	36	27	12	1.91
48929--49000	36	2.0	36	94	0	126	23	34	27	13	1.93
48950--48979	15	2.0	15	100	0	60	26	33	26	13	1.93
49036--49079	21	2.1	21	100	0	88	13	45	27	13	1.81
49115--49157	21	2.0	21	90	0	68	23	23	27	25	2.00
49185--49224	20	1.9	22	90	10	66	37	40	10	12	1.77
49439--49508	34	2.1	32	89	5	104	31	15	31	21	1.95
55101--55149	20	2.5	20	96	0	89	28	16	10	44	1.80
58909--58958	24	2.1	24	84	0	64	38	18	22	22	1.94
58949--59016	21	3.1	22	82	6	93	36	29	17	16	1.92
63679--63719	16	2.5	16	88	4	64	14	12	34	39	1.84
64315--64368	25	2.2	25	89	0	81	37	0	33	29	1.58
64459--64583	61	2.0	61	86	3	171	36	12	13	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64520--64893	82	4.6	82	85	1	500	36	16	11	36	1.85
64520--64893	164	2.3	164	89	2	565	36	16	11	36	1.85
71733--71895	35	4.7	35	78	6	159	28	20	17	33	1.95
71738--71895	70	2.3	70	85	2	201	27	20	17	34	1.95
78550--78727	11	14.9	11	68	21	85	35	2	5	56	1.36
78573--78611	18	2.2	17	86	4	51	41	0	5	53	1.23
78658--78719	26	2.4	26	84	12	83	38	1	1	58	1.18
78662--78719	9	5.7	9	77	22	53	37	1	1	58	1.18

Tables:   1

The End!