Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001388.1 Hibiscus syriacus cultivar Beakdansim tig00002709_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74081

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6488--6547
25
2.4
26
83
8
72
70
5
5
20
1.26
7055--7085
10
3.0
10
95
4
53
77
0
0
22
0.77
11482--11911
216
2.0
213
97
1
806
44
5
11
38
1.63
12526--12601
33
2.4
31
85
10
109
44
6
10
38
1.65
12539--12604
33
2.0
33
96
0
123
46
4
12
36
1.61
20412--20486
7
10.9
7
73
2
53
48
30
0
21
1.51
20455--20494
21
1.9
21
84
0
53
52
25
0
22
1.47
22080--22138
24
2.4
24
73
18
59
74
10
1
13
1.14
23330--23364
6
6.2
6
93
6
56
17
0
45
37
1.48
23796--23867
20
3.5
20
75
3
72
27
20
25
26
1.99
23803--23916
42
2.7
42
87
4
160
28
23
21
26
1.99
24276--24382
42
2.6
41
74
4
108
30
22
20
26
1.98
33081--33116
6
6.2
6
90
6
56
19
0
44
36
1.51
33081--33116
17
2.1
17
89
5
54
19
0
44
36
1.51
33260--33300
2
20.5
2
100
0
82
48
0
0
51
1.00
33339--33399
28
2.3
27
83
13
81
26
8
1
63
1.31
33344--33391
13
3.4
14
74
8
53
20
10
0
68
1.18
33921--33981
28
2.3
27
83
13
81
26
8
1
63
1.31
33926--33973
13
3.4
14
74
8
53
20
10
0
68
1.18
33283--34447
582
2.0
582
100
0
2330
36
9
12
41
1.75
43731--43774
15
2.7
17
82
10
56
38
0
0
61
0.96
43862--43900
18
2.2
18
86
9
53
38
0
5
56
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44204--44286
41
2.0
40
82
13
98
46
4
7
40
1.52
44407--44899
2
242.0
2
65
21
136
44
4
4
46
1.44
44407--44899
9
54.4
9
64
24
70
44
4
4
46
1.44
44407--44895
20
25.8
19
70
18
213
44
4
4
46
1.44
44522--44766
129
2.0
121
81
11
280
45
4
4
45
1.44
44774--44895
53
2.3
51
78
9
120
50
2
4
43
1.34
44719--44876
33
4.8
32
68
15
106
50
3
4
42
1.38
45918--45973
5
10.4
5
85
14
76
21
35
25
17
1.95
45920--45974
11
5.0
11
87
12
78
20
36
25
18
1.94
45918--45973
16
3.4
16
97
2
103
21
35
25
17
1.95
46526--46565
20
2.0
21
90
5
64
35
22
17
25
1.95
47908--47960
15
3.5
15
76
5
54
67
1
26
3
1.17
48517--48556
21
1.9
21
85
10
55
55
2
10
32
1.47
51382--51443
24
2.6
24
81
0
88
41
17
14
25
1.88
53533--53580
17
2.8
17
96
0
87
37
10
6
45
1.64
60384--60437
21
2.8
20
71
20
51
35
0
12
51
1.40
61155--61213
2
29.5
2
96
0
109
50
0
0
49
1.00
64847--64896
22
2.2
22
92
3
82
32
8
8
52
1.60
65173--65285
60
1.9
60
88
3
174
28
16
18
36
1.93
67489--67558
23
3.0
23
74
15
81
32
20
17
30
1.95
67756--67802
15
3.1
15
93
0
67
36
19
2
42
1.63
69814--69890
31
2.5
31
80
2
91
27
31
27
14
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70759--70816
20
2.9
20
97
0
107
29
27
25
17
1.97
70760--70816
7
8.4
7
80
7
73
28
28
26
17
1.98
70806--70880
17
4.4
17
91
0
123
17
22
40
20
1.92
70874--70925
20
2.7
20
87
3
70
25
26
25
23
2.00

Tables:   1

The End!