Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001389.1 Hibiscus syriacus cultivar Beakdansim tig00002710_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67953

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6940--7058
59
2.0
59
100
0
238
30
16
21
31
1.96
6940--7034
31
3.2
31
60
19
74
31
18
17
31
1.95
21299--21328
2
15.0
2
100
0
60
50
0
0
50
1.00
26313--26339
2
13.5
2
100
0
54
51
0
0
48
1.00
32536--32636
2
50.5
2
100
0
202
50
0
49
0
1.00
37929--37973
10
4.5
10
80
0
54
0
26
24
48
1.51
38429--38532
3
34.0
3
88
3
154
62
2
0
34
1.10
38657--39298
76
8.5
76
96
0
1153
35
21
21
22
1.96
38657--39298
151
4.2
152
95
0
1153
35
21
21
22
1.96
38657--39298
227
2.8
228
95
0
1171
35
21
21
22
1.96
39964--40042
22
3.6
22
70
3
70
40
10
12
36
1.77
42576--42883
114
2.8
112
89
5
450
31
20
15
32
1.94
49790--49826
15
2.7
15
88
12
53
62
8
5
24
1.44
51682--51726
10
4.5
10
80
0
54
0
26
24
48
1.51
52179--52285
3
35.0
3
90
3
169
63
1
0
34
1.05
53196--53553
60
6.0
60
90
0
536
23
17
21
37
1.94
56698--56753
27
2.1
27
86
3
78
50
12
10
26
1.73
59471--59501
16
1.9
16
100
0
62
41
0
6
51
1.27
61943--61975
2
16.5
2
100
0
66
51
0
0
48
1.00
61959--62835
434
2.0
427
93
2
1488
39
8
15
36
1.78
65494--65542
3
16.3
3
79
8
55
63
0
0
36
0.95
65937--66015
41
2.0
40
84
2
104
24
18
25
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67344--67400
8
7.5
8
81
16
68
14
8
0
77
0.99
67344--67400
15
3.8
15
82
13
73
14
8
0
77
0.99
67352--67399
7
6.7
7
86
9
53
12
8
0
79
0.94
67344--67403
23
2.7
23
84
2
77
15
8
0
76
1.00
67359--67404
23
2.0
23
95
0
83
13
6
0
80
0.89
67350--67414
21
3.0
20
78
14
58
12
9
0
78
0.96

Tables:   1

The End!