Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001390.1 Hibiscus syriacus cultivar Beakdansim tig00002714_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54014

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8129--8178
7
7.1
7
100
0
100
14
28
14
44
1.83
10840--11031
20
9.6
20
93
1
323
41
19
18
20
1.91
11063--11190
64
2.0
64
98
0
247
36
18
8
35
1.82
11292--11357
22
3.0
22
90
0
105
24
39
15
21
1.91
11681--11753
33
2.2
34
85
7
96
13
20
26
39
1.90
11724--11793
20
3.5
20
86
0
77
17
17
24
41
1.89
11760--11803
20
2.2
20
83
0
52
15
13
18
52
1.75
13679--13862
20
9.9
20
74
15
135
42
20
17
18
1.89
13888--13974
20
4.3
20
94
0
111
22
19
21
35
1.96
13902--13984
20
4.2
20
85
3
69
19
19
21
39
1.92
15943--15978
14
2.6
14
90
0
54
30
0
22
47
1.52
16194--16287
20
4.7
20
89
2
145
19
22
24
34
1.97
18716--18767
24
2.2
24
82
0
59
36
21
19
23
1.95
19595--19681
20
4.3
20
97
0
156
24
19
25
31
1.98
19675--19824
20
7.5
20
90
3
230
21
20
18
39
1.93
19817--19863
21
2.2
20
85
10
67
36
17
25
21
1.94
25522--25546
11
2.3
11
100
0
50
0
8
0
92
0.40
26664--26713
3
16.7
3
83
8
66
70
2
0
28
0.99
26664--26704
14
2.7
15
92
7
66
68
2
0
29
1.03
26670--26714
23
2.0
23
90
0
72
71
2
0
26
0.98
26677--26709
17
1.9
17
100
0
66
72
0
0
27
0.85
28224--28287
33
1.9
33
87
0
92
15
31
9
43
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28214--28297
33
2.5
33
80
0
87
21
27
9
41
1.84
28529--28592
28
2.3
28
97
0
119
20
35
4
39
1.73
29818--29886
10
7.1
10
73
12
63
18
21
30
28
1.97
29818--29888
19
3.7
19
88
1
97
18
23
29
28
1.98
29882--29956
17
4.4
17
91
0
123
18
38
24
18
1.93
29946--30005
7
8.9
7
74
7
61
16
26
28
28
1.97
29946--30005
27
2.2
27
87
0
93
16
26
28
28
1.97
29950--30010
20
3.0
21
80
4
63
16
24
29
29
1.96
29952--30002
13
3.8
13
76
5
57
17
25
27
29
1.98
37214--37265
19
2.7
19
87
3
68
19
25
28
26
1.98
37214--37263
10
5.1
10
74
13
50
20
22
30
28
1.98
37259--37333
17
4.4
17
86
0
105
20
40
22
17
1.92
37329--37383
20
2.8
20
91
0
83
20
25
23
30
1.98
37324--37386
7
9.3
7
75
6
67
20
26
23
28
1.99
39658--39709
20
2.6
20
78
6
61
32
13
26
26
1.94
40353--40399
15
3.1
15
93
0
76
42
2
19
36
1.63
40597--40666
23
3.0
23
81
4
88
30
17
21
31
1.96
43262--43311
22
2.2
22
92
3
82
52
8
8
32
1.60
46897--46951
2
27.5
2
100
0
110
49
0
0
50
1.00
47670--47710
21
2.0
21
85
0
55
51
14
0
34
1.43
47664--47717
21
2.8
20
71
20
51
51
12
0
35
1.40
47844--47877
6
5.8
6
89
6
52
0
0
11
88
0.52

Tables:   1

The End!