genome.fa.s1391.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001391.1 Hibiscus syriacus cultivar Beakdansim tig00002715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143905

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8490--8548	26	2.2	26	90	3	91	35	8	10	45	1.68
9441--9495	28	2.0	28	82	13	69	60	1	3	34	1.25
11669--11864	97	2.0	97	98	0	383	35	16	16	31	1.92
20694--20844	49	3.1	49	60	22	109	33	16	15	33	1.91
20653--20848	97	2.0	97	98	0	383	35	15	17	31	1.91
29620--29690	31	2.3	31	90	0	106	28	23	12	35	1.92
32316--32377	29	2.1	29	90	0	97	37	24	8	30	1.84
32323--32389	29	2.3	29	92	0	107	35	26	5	31	1.81
32426--32502	31	2.5	31	91	0	118	35	12	25	25	1.92
40123--40167	21	2.1	22	84	12	58	48	15	13	22	1.79
48596--48635	21	1.9	21	85	10	55	35	10	2	52	1.48
51148--51178	2	15.5	2	100	0	62	51	0	0	48	1.00
52135--52173	17	2.2	18	95	4	71	20	25	25	28	1.99
52158--52191	12	2.8	12	90	0	59	32	17	14	35	1.91
53509--53551	3	14.7	3	86	13	63	65	0	0	34	0.93
59050--59175	67	1.9	67	89	0	198	29	29	21	19	1.98
64415--64535	64	1.9	64	91	0	197	28	28	21	21	1.99
66079--66146	23	3.0	23	82	0	82	17	23	26	32	1.97
71584--71646	12	5.0	13	79	12	51	49	17	1	31	1.56
75507--75534	2	14.0	2	100	0	56	50	0	0	50	1.00
90579--90645	30	2.2	29	84	7	89	13	23	23	38	1.91
91530--91562	13	2.3	15	90	10	52	24	9	12	54	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92017--92046	2	15.0	2	100	0	60	50	0	0	50	1.00
92200--92229	2	15.0	2	100	0	60	50	0	0	50	1.00
93449--93501	16	3.2	16	84	7	63	62	0	0	37	0.96
93451--93519	34	2.0	35	85	5	95	57	4	0	37	1.18
95952--95987	18	2.0	18	94	0	63	52	8	16	22	1.70
96928--96998	20	3.5	20	100	0	142	29	11	29	29	1.91
96910--96999	40	2.2	40	84	9	121	27	14	25	32	1.95
96928--97017	40	2.2	40	88	3	128	33	11	27	27	1.91
97675--97733	15	3.9	15	80	4	55	37	3	20	38	1.69
97898--98021	23	5.3	23	77	6	99	25	23	24	27	2.00
97913--98018	46	2.3	46	82	6	117	27	22	23	26	2.00
102355--102532	90	2.0	90	90	0	284	49	4	7	38	1.52
103160--103217	30	1.9	30	100	0	116	31	22	13	32	1.93
106757--106782	2	13.0	2	100	0	52	50	0	50	0	1.00
108913--109014	32	3.2	32	76	2	107	25	24	30	19	1.98
109847--109907	22	2.8	22	89	0	86	24	22	21	31	1.98
114549--114606	22	2.6	22	86	0	71	27	24	18	29	1.98
118635--118659	2	12.5	2	100	0	50	48	0	0	52	1.00
120839--120872	14	2.3	15	85	10	52	41	0	5	52	1.25
121982--122052	18	4.1	17	76	10	63	38	11	11	39	1.77
121983--122051	35	2.0	35	82	5	86	36	11	11	40	1.78
124954--125042	30	3.0	30	77	11	85	39	15	3	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127197--127221	5	5.0	5	100	0	50	80	0	20	0	0.72
134171--134222	26	2.0	26	100	0	104	46	19	11	23	1.82
141873--141910	19	2.0	20	89	5	60	50	2	26	21	1.62

Tables:   1

The End!