genome.fa.s1392.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001392.1 Hibiscus syriacus cultivar Beakdansim tig00002716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81724

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3565--4641	239	4.5	239	83	4	1268	31	16	16	35	1.92
4519--4641	42	2.9	42	81	0	147	20	22	21	34	1.96
14162--14190	13	2.1	14	93	6	51	31	0	0	68	0.89
14216--14265	10	4.6	11	83	14	68	46	0	0	54	1.00
14223--14263	2	21.5	2	90	9	68	48	0	0	51	1.00
18659--18898	95	2.7	95	79	12	256	30	19	18	32	1.96
20109--20536	72	5.9	72	91	1	680	28	18	14	39	1.90
20627--20713	36	2.4	36	82	0	102	27	21	11	39	1.88
20539--20813	101	2.7	101	91	3	426	30	19	12	37	1.89
20728--20812	36	2.4	36	84	4	109	27	20	12	40	1.89
20813--20951	37	3.9	37	81	15	159	41	17	9	30	1.81
22390--22435	2	23.5	2	95	4	85	50	0	0	50	1.00
26190--26224	2	18.5	2	88	11	56	48	0	0	51	1.00
27986--28282	95	3.1	95	89	0	441	27	16	18	36	1.93
30545--30599	22	2.6	21	80	8	67	41	16	18	23	1.89
34689--34773	3	29.0	3	75	13	79	60	0	1	38	1.05
34902--35523	123	5.1	123	90	1	878	26	19	16	38	1.92
37092--37268	63	2.8	63	81	3	169	20	9	11	58	1.60
41501--41599	3	33.3	3	95	2	182	32	1	0	66	0.98
54422--54479	12	4.7	13	89	10	79	81	0	15	3	0.83
55624--56388	83	9.2	84	95	1	1265	29	13	21	35	1.92
57192--57848	114	5.7	113	88	3	904	38	12	20	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58163--58240	3	26.7	3	92	5	133	34	1	0	64	1.02
58236--58265	11	2.8	11	95	5	53	56	0	0	43	0.99
58701--58758	26	2.1	29	81	12	70	67	8	22	1	1.27
64899--64943	22	2.0	23	83	12	58	57	2	0	40	1.11
71271--71308	20	2.0	20	89	5	60	50	10	5	34	1.59
71271--71316	20	2.3	20	85	3	58	52	8	6	32	1.58
72724--72821	43	2.3	43	80	0	106	30	28	17	23	1.97
73754--73798	20	2.2	20	88	7	65	57	8	4	28	1.48
76372--76437	32	2.1	32	97	0	123	21	7	43	27	1.79
76379--76468	32	2.8	32	89	3	126	24	4	43	27	1.73
76888--77731	135	6.3	134	82	5	919	31	14	20	32	1.93
76888--77731	270	3.2	268	83	4	1011	31	14	20	32	1.93
79578--79606	3	9.7	3	100	0	58	65	0	0	34	0.93

Tables:   1

The End!