genome.fa.s1394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001394.1 Hibiscus syriacus cultivar Beakdansim tig00002724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65260

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5510--5881	54	6.9	53	87	4	496	32	19	16	31	1.94
5511--5881	160	2.3	161	90	2	577	32	19	16	31	1.94
8042--8066	2	12.5	2	100	0	50	52	0	0	48	1.00
10031--10091	22	2.9	22	80	7	65	29	14	21	34	1.93
10515--10971	45	10.2	45	94	1	774	39	11	19	29	1.86
10515--10971	134	3.4	135	94	1	783	39	11	19	29	1.86
10515--10971	179	2.5	180	93	1	783	39	11	19	29	1.86
12893--12951	17	3.5	17	68	13	50	28	15	8	47	1.74
21192--21243	20	2.6	20	85	8	79	32	15	32	19	1.93
21268--21326	19	2.9	19	79	13	73	32	13	20	33	1.91
21268--21328	22	2.9	22	85	7	83	31	13	22	32	1.92
25260--25328	34	2.0	34	94	0	120	42	14	21	21	1.89
27316--27542	7	32.4	7	100	0	454	43	0	14	42	1.45
28399--28467	30	2.2	30	82	15	86	34	5	15	43	1.71
28408--28467	29	2.0	30	90	6	95	33	6	15	45	1.72
28547--28607	21	2.9	21	97	2	113	19	37	18	24	1.94
28773--28812	20	1.9	21	85	10	55	37	37	10	15	1.80
29956--30003	19	2.5	20	82	3	62	52	6	12	29	1.63
31278--31346	30	2.2	30	85	15	95	34	5	17	42	1.73
31287--31346	30	2.0	30	93	6	104	33	6	16	43	1.74
31426--31486	21	2.9	21	97	2	113	19	37	18	24	1.94
31652--31691	20	1.9	21	85	10	55	37	37	10	15	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32835--32882	19	2.5	20	82	3	62	52	6	12	29	1.63
34157--34225	30	2.2	30	85	15	95	34	5	17	42	1.73
34166--34225	30	2.0	30	93	6	104	33	6	16	43	1.74
34305--34362	21	2.8	21	94	0	107	20	39	18	20	1.92
34570--34609	20	1.9	22	90	10	66	37	40	10	12	1.77
37884--37964	3	27.0	3	77	5	65	40	3	0	55	1.17
45303--45433	54	2.7	47	82	9	138	35	15	22	25	1.94
45336--45448	54	2.1	54	91	0	181	38	15	18	28	1.91
46497--47403	219	4.2	218	89	2	1313	30	17	20	31	1.95
47826--47902	3	26.3	3	79	10	70	35	0	0	64	0.93
47826--47902	16	4.4	17	72	15	59	35	0	0	64	0.93
47826--47903	20	3.8	20	86	5	95	35	0	0	64	0.94
50480--50843	54	6.8	54	85	2	437	32	18	15	32	1.92
50480--50843	161	2.3	160	87	2	525	32	18	15	32	1.92
50480--50843	107	3.4	108	83	4	441	32	18	15	32	1.92
55004--55045	22	1.9	22	95	0	75	28	14	26	30	1.95
55469--55949	45	11.0	45	87	5	682	38	11	19	30	1.86
55469--55935	89	5.3	89	87	3	651	38	11	19	30	1.86
62283--62424	45	3.2	45	89	3	225	40	12	19	27	1.88
62363--62484	59	2.0	60	93	1	210	38	9	18	32	1.84
62422--62771	45	7.8	45	92	1	551	39	11	18	31	1.85
62331--62529	104	1.9	104	93	2	346	38	11	20	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64676--64745	22	3.3	22	68	11	56	35	11	24	28	1.90
65087--65243	53	3.0	53	83	3	199	31	19	16	31	1.94

Tables:   1

The End!