genome.fa.s1395.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001395.1 Hibiscus syriacus cultivar Beakdansim tig00002725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72781

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--455	139	3.3	134	79	9	430	31	10	12	45	1.76
4921--4946	9	2.9	9	100	0	52	65	0	0	34	0.93
6063--6126	27	2.4	27	83	0	101	54	3	3	39	1.32
6379--6580	103	2.0	100	93	2	341	42	14	17	25	1.88
7296--7326	2	15.5	2	100	0	62	48	0	0	51	1.00
8547--8593	13	3.6	13	91	0	76	29	19	17	34	1.94
8573--8738	85	2.0	85	81	4	201	31	19	17	31	1.95
15543--15573	15	2.1	15	93	0	53	70	0	19	9	1.14
27817--27868	21	2.5	21	93	0	86	17	7	26	48	1.74
27919--27957	21	1.9	21	89	5	62	25	10	23	41	1.86
31776--31827	20	2.6	20	87	0	86	34	13	17	34	1.89
37137--37253	23	5.2	22	84	7	130	34	24	23	17	1.96
37353--37467	44	2.6	44	97	0	212	27	16	13	42	1.85
43481--43605	23	5.3	24	85	2	157	23	23	24	29	1.99
43536--43604	24	2.9	24	91	2	77	24	24	24	26	2.00
44992--45029	17	2.2	18	85	4	51	36	10	10	42	1.74
48575--48607	17	1.9	17	93	0	57	39	3	18	39	1.66
48849--48973	24	5.3	24	78	8	114	23	20	20	36	1.96
58880--58907	8	3.5	8	100	0	56	0	21	0	78	0.75
58903--58944	7	6.0	7	100	0	84	0	28	0	71	0.86
58877--58943	7	8.6	8	84	12	54	0	23	0	76	0.79
58901--58951	21	2.5	20	90	9	84	1	25	0	72	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65477--65536	22	2.6	22	92	5	93	38	31	15	15	1.88
72392--72488	42	2.3	42	82	5	117	21	25	22	29	1.99
72130--72781	256	2.5	257	89	2	963	31	16	18	34	1.93

Tables:   1

The End!