Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001397.1 Hibiscus syriacus cultivar Beakdansim tig00002727_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91661
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:77 original size:37 final size:36
Alignment explanation
Indices: 5--146 Score: 180
Period size: 37 Copynumber: 3.9 Consensus size: 36
1 CAAC
* * *
5 ACTCTTCCGAGAAGGCTTTAAAATGGATTTGCTTCATT
1 ACTCTTCGGTGAAGGC-TTAAGATGGATTTGCTTCA-T
*
43 ACTCTTCAGTGAAGGCTTAAGATGGATTTGCTTCACT
1 ACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCA-T
80 ACTCTTCGGTGAAGGCTTAAGATGGA--TGACTTCAT
1 ACTCTTCGGTGAAGGCTTAAGATGGATTTG-CTTCAT
*
115 ACTCTTCGGTGAAGGCTTAAGATTGACTTTGC
1 ACTCTTCGGTGAAGGCTTAAGATGGA-TTTGC
147 CCTAATCTCA
Statistics
Matches: 94, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
35 28 0.30
36 5 0.05
37 45 0.48
38 16 0.17
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (36 bp):
ACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCAT
Found at i:129 original size:72 final size:75
Alignment explanation
Indices: 5--146 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 75
1 CAAC
5 ACTCTTCCGAGAAGGCTTTAAAATGGATTTGCTTCATTACTCTTCAGTGAAGGCTTAAGATGGA-
1 ACTCTTCCGAGAAGGCTTTAAAATGGA-TTGCTTCATTACTCTTCAGTGAAGGCTTAAGATGGAC
69 TTTGCTTCACT
65 TTTGCTTCACT
* * * * *
80 ACTCTTCGGTGAAGGC-TTAAGATGGA-TGACTTCA-TACTCTTCGGTGAAGGCTTAAGATTGAC
1 ACTCTTCCGAGAAGGCTTTAAAATGGATTG-CTTCATTACTCTTCAGTGAAGGCTTAAGATGGAC
142 TTTGC
65 TTTGC
147 CCTAATCTCA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
72 27 0.45
73 10 0.17
74 9 0.15
75 14 0.23
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (75 bp):
ACTCTTCCGAGAAGGCTTTAAAATGGATTGCTTCATTACTCTTCAGTGAAGGCTTAAGATGGACT
TTGCTTCACT
Found at i:1628 original size:125 final size:125
Alignment explanation
Indices: 1406--1667 Score: 366
Period size: 125 Copynumber: 2.1 Consensus size: 125
1396 TGCTTCACTA
* * * **
1406 GTGCCGCAATATTATCTTATACTGGTACGAGCCTTCAAAATACCCCAACATCTCCGATTGTAAGG
1 GTGCCCCAACATTATCTTATACTGGTACGAGCCTTCAAAATACCCCAACACCTCAAATTGTAAGG
* *
1471 CTCACTCTCAATGCCTTCTTGGTCTAAATCTTGTCATCTCAACATGATGTGGGTTTAGTT
66 CTCACTCTCAATGCCTTCTTGGTCTAAATCTTGTCATCTCAACATGATGTGGGTTCAGTC
* * *
1531 GTGCCCCAACATTGTCTTATACTGGTACGAGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGG
1 GTGCCCCAACATTATCTTATACTGGTACGAGCCTTCAAAATACCCCAACACCTCAAATTGTAAGG
* * *
1596 CTCATTCTTC-ATGCC-TCATTGGTTTGAATCTTGTCATCTCAACATGATGTGGGTTCAGTC
66 CTCACTC-TCAATGCCTTC-TTGGTCTAAATCTTGTCATCTCAACATGATGTGGGTTCAGTC
*
1656 GTGCCCGAACAT
1 GTGCCCCAACAT
1668 ATCACAACTT
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
124 2 0.02
125 117 0.97
126 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (125 bp):
GTGCCCCAACATTATCTTATACTGGTACGAGCCTTCAAAATACCCCAACACCTCAAATTGTAAGG
CTCACTCTCAATGCCTTCTTGGTCTAAATCTTGTCATCTCAACATGATGTGGGTTCAGTC
Found at i:5199 original size:21 final size:21
Alignment explanation
Indices: 5175--5266 Score: 123
Period size: 21 Copynumber: 4.4 Consensus size: 21
5165 ATGCAAAGTA
*
5175 GTCTTCAT-GTCTTTGTGAATG
1 GTCTTC-TCGTCTTTATGAATG
5196 GTCTTCTCGTCTTTATGAATG
1 GTCTTCTCGTCTTTATGAATG
5217 GTCTTCTCGTCTTTATGAATG
1 GTCTTCTCGTCTTTATGAATG
* * * *
5238 GTCTTCTCATCCTTGTGCATG
1 GTCTTCTCGTCTTTATGAATG
5259 GTCTTCTC
1 GTCTTCTC
5267 ATCCTTGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 1 0.02
21 64 0.98
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.47
Consensus pattern (21 bp):
GTCTTCTCGTCTTTATGAATG
Found at i:9462 original size:54 final size:54
Alignment explanation
Indices: 9381--9571 Score: 301
Period size: 54 Copynumber: 3.5 Consensus size: 54
9371 CCCACTTTCA
* **
9381 CTTTCTTTAGGGAGTATAGAACTCGAACATTTTCTTCTTACGGGTTCGCTCCCT
1 CTTTCTCTAGGGAGTATAGAACTCGAACACATTCTTCTTACGGGTTCGCTCCCT
*
9435 CTTTCTCTATGGAGTATAGAACTCGAACACATTCTTCTTACGGGTTCGCTCCCT
1 CTTTCTCTAGGGAGTATAGAACTCGAACACATTCTTCTTACGGGTTCGCTCCCT
* * *
9489 CTTTCTCTAGGGGGTATAGAACTCGAACACATTCTTCTTACGAGTTTGCTCCCT
1 CTTTCTCTAGGGAGTATAGAACTCGAACACATTCTTCTTACGGGTTCGCTCCCT
* *
9543 CTTTCTTTAGGGAGTATACAACTCGAACA
1 CTTTCTCTAGGGAGTATAGAACTCGAACA
9572 TCTTTATCAA
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTTCTCTAGGGAGTATAGAACTCGAACACATTCTTCTTACGGGTTCGCTCCCT
Found at i:9678 original size:55 final size:55
Alignment explanation
Indices: 9592--10114 Score: 818
Period size: 55 Copynumber: 9.6 Consensus size: 55
9582 TCGTATATCG
* *
9592 CTTCAGAAAGTATAAAACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
* * * *
9647 CTTCAGAGAGTATAAGACTCGAACAACCTTCAATAATTGTGTCTGCTCTCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
* * *
9702 CTTCAGAGAGTATAAGACTCGAAC-ATCTTCATCAAACGGGTCTGCTCCCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
* * * *
9756 CTTCAGAGAGTATAAGACTCAAACAACCTTCAACAATCGTGTTTTCTCCCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
9811 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
* * *
9866 CTTCAGAGAGTATAAGACTCGAACAATATTCAACAATCGTGTCTGCTCTCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
* *
9921 CTTTAGAGAGTATAAGACTCGAACAATATTCAACAATCGTGTCTGCTCCCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
* *
9976 CTTCAGAGAGTATAAGACTTGAACAATCTTCAACAATCGTGTCTGCTCTCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
** *
10031 CTTCAGAGAGTATAAGACTCGAAC-ATCTTCTTCAATCGTGTCTGCTCTCTATTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
10085 CTTCAGAGAGTATAAGACTCGAAC-ATCTTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTC
10115 TTCAAATGGG
Statistics
Matches: 430, Mismatches: 37, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
54 104 0.24
55 326 0.76
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (55 bp):
CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTC
Found at i:10605 original size:37 final size:37
Alignment explanation
Indices: 10564--10706 Score: 223
Period size: 37 Copynumber: 3.8 Consensus size: 37
10554 TTGCTCCAAC
* * *
10564 ACTCTTCCGAGAAGGCTTAAAATGGATTTGCTTCATT
1 ACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCATT
* *
10601 ACTCTTCAGTGAAGGCTTAAGATGGATTTGCTTCACT
1 ACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCATT
10638 ACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCATT
1 ACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCATT
*
10675 ACTCTTCGGTGAAGGCTTAAGATTGACTTTGC
1 ACTCTTCGGTGAAGGCTTAAGATGGA-TTTGC
10707 CCTAATCTCA
Statistics
Matches: 98, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 93 0.95
38 5 0.05
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (37 bp):
ACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCATT
Found at i:10674 original size:74 final size:74
Alignment explanation
Indices: 10548--10706 Score: 232
Period size: 74 Copynumber: 2.1 Consensus size: 74
10538 CTGATGATCT
10548 GATGG-TTTGCTCCAACACTCTTCCGAGAAGGCTTAAAATGGATTTGCTTCATTACTCTTCAGTG
1 GATGGATTTGCTCCAACACTCTTCCGAGAAGGCTTAAAATGGATTTGCTTCATTACTCTTCAGTG
10612 AAGGCTTAA
66 AAGGCTTAA
* * * * *
10621 GATGGATTTGCTTC-ACTACTCTTCGGTGAAGGCTTAAGATGGATTTGCTTCATTACTCTTCGGT
1 GATGGATTTGCTCCAAC-ACTCTTCCGAGAAGGCTTAAAATGGATTTGCTTCATTACTCTTCAGT
10685 GAAGGCTTAA
65 GAAGGCTTAA
*
10695 GATTGACTTTGC
1 GATGGA-TTTGC
10707 CCTAATCTCA
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
73 7 0.09
74 65 0.84
75 5 0.06
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (74 bp):
GATGGATTTGCTCCAACACTCTTCCGAGAAGGCTTAAAATGGATTTGCTTCATTACTCTTCAGTG
AAGGCTTAA
Found at i:14568 original size:6 final size:6
Alignment explanation
Indices: 14557--14587 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
14547 ACGTTGGCTG
14557 CTGGAA CTGGAA CTGGAA CTGGAA CTGGAA C
1 CTGGAA CTGGAA CTGGAA CTGGAA CTGGAA C
14588 GAGTATGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.32, T:0.16
Consensus pattern (6 bp):
CTGGAA
Found at i:14947 original size:15 final size:15
Alignment explanation
Indices: 14929--15007 Score: 54
Period size: 15 Copynumber: 5.4 Consensus size: 15
14919 AAATATAAAA
14929 ATTATTATAAAATAT
1 ATTATTATAAAATAT
* * *
14944 ATTATT-TTAATTGT
1 ATTATTATAAAATAT
** * *
14958 -TTAAAATATAATAA
1 ATTATTATAAAATAT
* *
14972 ATAATTATAAAATTT
1 ATTATTATAAAATAT
*
14987 ATTATTATAAAATTT
1 ATTATTATAAAATAT
15002 ATTATT
1 ATTATT
15008 TTAATTATTT
Statistics
Matches: 45, Mismatches: 17, Indels: 4
0.68 0.26 0.06
Matches are distributed among these distances:
13 3 0.07
14 8 0.18
15 34 0.76
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (15 bp):
ATTATTATAAAATAT
Found at i:14964 original size:42 final size:43
Alignment explanation
Indices: 14895--14992 Score: 137
Period size: 43 Copynumber: 2.3 Consensus size: 43
14885 CTTATATGGT
* *
14895 TAAAATATATT-CTTTAATTATTAAAAATATAA-AAATTATTA
1 TAAAATATATTATTTTAATTATTAAAAATATAATAAATAATTA
* *
14936 TAAAATATATTATTTTAATTGTTTAAAATATAATAAATAATTA
1 TAAAATATATTATTTTAATTATTAAAAATATAATAAATAATTA
*
14979 TAAAATTTATTATT
1 TAAAATATATTATT
14993 ATAAAATTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 11 0.22
42 18 0.36
43 21 0.42
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (43 bp):
TAAAATATATTATTTTAATTATTAAAAATATAATAAATAATTA
Found at i:17595 original size:16 final size:17
Alignment explanation
Indices: 17565--17597 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
17555 AACCCGATCC
17565 AAAATAATATATTTATT
1 AAAATAATATATTTATT
*
17582 AAAA-AATATTTTTATT
1 AAAATAATATATTTATT
17598 CAATAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AAAATAATATATTTATT
Found at i:19678 original size:41 final size:42
Alignment explanation
Indices: 19616--19698 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
19606 AGCGCATCAT
*
19616 CTCTTTGAAAATATCAAA-TTTTTATTTTAAAATTTTATAAA
1 CTCTTTGAAAATATCAAATTTTTTATTTTAAAAATTTATAAA
*
19657 CTCTTTGAAAATATCATATTTTTTATTTTAAAAATTTATAAA
1 CTCTTTGAAAATATCAAATTTTTTATTTTAAAAATTTATAAA
19699 TTCATCATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 17 0.44
42 22 0.56
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.49
Consensus pattern (42 bp):
CTCTTTGAAAATATCAAATTTTTTATTTTAAAAATTTATAAA
Found at i:20325 original size:164 final size:164
Alignment explanation
Indices: 20129--20427 Score: 472
Period size: 164 Copynumber: 1.8 Consensus size: 164
20119 TTGAAAAAAA
* *
20129 TATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACAAAACCA
1 TATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGATCTCAAAAATGACAAAACCA
* * * * *
20194 GTAAAATGATACCGAATATGTTGAAAGTATCGATACTTTAATATAAATATCGACACTTTCTGAAA
66 GAAAAAAGATACCGAATATGTTGAAAGTATCAATAATTTAATATAAATATCGACACTTTATGAAA
20259 TTAAACTAAAAAGTGTCGACACTTTATGAAAACG
131 TTAAACTAAAAAGTGTCGACACTTTATGAAAACG
* **
20293 TATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGATCTCAAAAATGATAAAACTG
1 TATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGATCTCAAAAATGACAAAACCA
* * * *
20358 GAAAAAAGATATCGGATATGTTGAAAGTGTCAATAATTTAATATAAATATCGACACTTTATGAAT
66 GAAAAAAGATACCGAATATGTTGAAAGTATCAATAATTTAATATAAATATCGACACTTTATGAAA
20423 TTAAA
131 TTAAA
20428 AGAGAAGAAG
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
164 121 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (164 bp):
TATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGATCTCAAAAATGACAAAACCA
GAAAAAAGATACCGAATATGTTGAAAGTATCAATAATTTAATATAAATATCGACACTTTATGAAA
TTAAACTAAAAAGTGTCGACACTTTATGAAAACG
Found at i:20625 original size:151 final size:151
Alignment explanation
Indices: 20379--20677 Score: 483
Period size: 151 Copynumber: 2.0 Consensus size: 151
20369 TCGGATATGT
20379 TGAAAGTGTCAATAATTTAATATAAATATCGACACTTTATGAATTTAAAAGAGAAGAAGTTATAG
1 TGAAAGTGTCAATAATTTAATATAAATATCGACACTTTATGAATTTAAAAGAGAAGAAGTTATAG
**
20444 CGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGCTAAAAATA
66 CGCCTAAAAAGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACAGCTAAAAATA
*
20509 TGATAAAACCGGTCTCAACAA
131 TGATAAAACAGGTCTCAACAA
* * * *
20530 TGAAAGTGTCGATACTTTAATATAACTATCGACACTTT-TGGAATTTAAAAGAGAATAAGTTATA
1 TGAAAGTGTCAATAATTTAATATAAATATCGACACTTTAT-GAATTTAAAAGAGAAGAAGTTATA
* * * *
20594 GCGCCTATAAAGTGTCGATATTTTAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAT
65 GCGCCTAAAAAGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACAGCTAAAAAT
20659 ATGATAAAACAGGTCTCAA
130 ATGATAAAACAGGTCTCAA
20678 AATTGACAAA
Statistics
Matches: 136, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
150 1 0.01
151 135 0.99
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.28
Consensus pattern (151 bp):
TGAAAGTGTCAATAATTTAATATAAATATCGACACTTTATGAATTTAAAAGAGAAGAAGTTATAG
CGCCTAAAAAGTGTCGACACTTTAAAAAAATGTATCGATCCATAACAATATAACAGCTAAAAATA
TGATAAAACAGGTCTCAACAA
Found at i:20838 original size:183 final size:180
Alignment explanation
Indices: 20530--20914 Score: 632
Period size: 183 Copynumber: 2.1 Consensus size: 180
20520 GTCTCAACAA
*
20530 TGAAAGTGTCGATACTTTAATATAACTATCGACACTTTTGGAATTTAAAAGAGAATAAGTTATAG
1 TGAAAGTGTCGATACTTTAATATAACTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAG
20595 CGCCTATAAAGTGTCGATATTTTAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATA
66 CGCCTATAAAGTGTCGATATTTTAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATA
20660 TGATAAAA-CAGGTCTCAAAATTGACAAAACCAGTAAAACGCTACCGGATATGT
131 TGATAAAACCA-GTCTCAAAA-TGAC--AACCAGTAAAACGCTACCGGATATGT
* * **
20713 TGAAAGTGTCGATAATTTAATATAAGTATTTACACTTTAT-GAATTTAAAAGAGAAGAAGTTATA
1 TGAAAGTGTCGATACTTTAATATAACTATCGACACTTT-TGGAATTTAAAAGAGAAGAAGTTATA
20777 GCGCCTATAAAGTGTCGATACTTTT-AAAAAATGTATCGATCCATAACAATATAACAGGTAAAAA
65 GCGCCTATAAAGTGTCGATA-TTTTAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAA
* *
20841 TATGATAAAACCAGTCTCAAAATGACAACCGGTAAAGCGCTACCGGATATGT
129 TATGATAAAACCAGTCTCAAAATGACAACCAGTAAAACGCTACCGGATATGT
20893 TGAAAGTGTCGATACTTTAATA
1 TGAAAGTGTCGATACTTTAATA
20915 AGTACGCGTA
Statistics
Matches: 191, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
180 45 0.24
182 4 0.02
183 135 0.71
184 7 0.04
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (180 bp):
TGAAAGTGTCGATACTTTAATATAACTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAG
CGCCTATAAAGTGTCGATATTTTAAAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATA
TGATAAAACCAGTCTCAAAATGACAACCAGTAAAACGCTACCGGATATGT
Found at i:21328 original size:19 final size:19
Alignment explanation
Indices: 21304--21349 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
21294 TATTTAATAT
*
21304 TTATAGGTAAAAAATTATA
1 TTATAGGTAAAAAATGATA
*
21323 TTATAGGTAGAAAATGATA
1 TTATAGGTAAAAAATGATA
*
21342 TTTTAGGT
1 TTATAGGT
21350 TGTATAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.39
Consensus pattern (19 bp):
TTATAGGTAAAAAATGATA
Found at i:22131 original size:23 final size:23
Alignment explanation
Indices: 22105--22173 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
22095 CACCACAGCT
22105 CGTATAATTGCACCGAAGTGCCA
1 CGTATAATTGCACCGAAGTGCCA
* * *
22128 CGTAGAATTGCACCGGAGTGCCG
1 CGTATAATTGCACCGAAGTGCCA
*
22151 CGTATAATTGCACCGTAGTGCCA
1 CGTATAATTGCACCGAAGTGCCA
22174 TATAATAATG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (23 bp):
CGTATAATTGCACCGAAGTGCCA
Found at i:22356 original size:101 final size:102
Alignment explanation
Indices: 22175--22399 Score: 355
Period size: 101 Copynumber: 2.2 Consensus size: 102
22165 GTAGTGCCAT
** * * * *
22175 ATAATA-ATGTCCATAAGGACTACATATCATTCCTTAAGAATCATATATATATACTAGGGATCAA
1 ATAATATATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAA
22239 GTATATGTCTCACCAGACTTCACACATGTTCCAAAGA
66 GTATATGTCTCACCAGACTTCACACATGTTCCAAAGA
*
22276 AT-ATATATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAA
1 ATAATATATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAA
*
22340 GTATGTGTCTCACCAGACTTCACACATGTTCCAAAGA
66 GTATATGTCTCACCAGACTTCACACATGTTCCAAAGA
22377 ATACATATATGTCCCGAAGGACC
1 ATA-ATATATGTCCCGAAGGACC
22400 GCGTAGACCC
Statistics
Matches: 113, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
100 3 0.03
101 91 0.81
103 19 0.17
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (102 bp):
ATAATATATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAA
GTATATGTCTCACCAGACTTCACACATGTTCCAAAGA
Found at i:23477 original size:21 final size:21
Alignment explanation
Indices: 23453--23497 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
23443 TTTTGTTCGT
* *
23453 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
23474 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
23495 TTG
1 TTG
23498 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:25701 original size:9 final size:9
Alignment explanation
Indices: 25687--25729 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
25677 AATGAGTTAA
25687 AGGAGGCAG
1 AGGAGGCAG
*
25696 AGGAGGTAG
1 AGGAGGCAG
25705 AGGAGGCAG
1 AGGAGGCAG
* *
25714 AGGAAGCCG
1 AGGAGGCAG
25723 AGGAGGC
1 AGGAGGC
25730 GGTGGAGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.33, C:0.12, G:0.53, T:0.02
Consensus pattern (9 bp):
AGGAGGCAG
Found at i:26804 original size:201 final size:200
Alignment explanation
Indices: 26201--27016 Score: 1357
Period size: 200 Copynumber: 4.1 Consensus size: 200
26191 AAAAAGTGTA
* * *
26201 AAAACACATAATTATAATATAATAGGTAAATTATTAATGTAACTGGTCTAAATATACCGGTTTTT
1 AAAA-ACATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTT
* *
26266 TAGAAAACAAGTGTACAAAAAGAATCGACACAAAT-AAAAAA-TGTCGATACATCTTGTCCAGAT
65 GAGAAAACAGGTGTACAAAAAGAATCGACACAAATAAAAAAAGTGTCGATACATCTTGTCCAGAT
* *
26329 TATATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAAAAGTGTCGATCCCGAAA
130 TGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAA
26394 ACATCG
195 ACATCG
* **
26400 AAAAATATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACATGTTTTTG
1 AAAAACATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTTG
*
26465 AGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGATACATCTTGTCCAGATT
66 AGAAAACAGGTGTACAAAAAGAATCGACACAAATAAAAAAAGTGTCGATACATCTTGTCCAGATT
** *
26530 GTATTTTAAAAACCAAGTGCACAACAAAGTGTAAATACATTTAAAACAAGTGTTGATCCCGAAAA
131 GTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAA
26595 CATCG
196 CATCG
* *
26600 AAAAACATCATTATAATGTAATATGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTTG
1 AAAAACATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTTG
* *
26665 AGAAAACATGTGTACAAAAAGAATTGACACAAATAAAAAAAAGTGTCGATACATCTTGTCCAGAT
66 AGAAAACAGGTGTACAAAAAGAATCGACACAAAT-AAAAAAAGTGTCGATACATCTTGTCCAGAT
* * *
26730 TGTATTTTAAAAACCAAGTGTACAACAAAGTGTCGCTACATTTAAAACAAGTGTCGATCACGAAA
130 TGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAA
26795 ACATCG
195 ACATCG
* * *
26801 AAAAATATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTTTAAATATACCGATTTTTG
1 AAAAACATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTTG
* * *
26866 AGAAAACAGGTGTACAAAAAGTATCGAGACAAATAAAAAAAGTGTCGATACATCTTGTCCATATT
66 AGAAAACAGGTGTACAAAAAGAATCGACACAAATAAAAAAAGTGTCGATACATCTTGTCCAGATT
26931 GTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAA
131 GTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAA
26996 CATCG
196 CATCG
27001 AAAAACATAATTATAA
1 AAAAACATAATTATAA
27017 CCAAATGTCT
Statistics
Matches: 572, Mismatches: 42, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
198 86 0.15
199 10 0.02
200 291 0.51
201 185 0.32
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.28
Consensus pattern (200 bp):
AAAAACATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTTG
AGAAAACAGGTGTACAAAAAGAATCGACACAAATAAAAAAAGTGTCGATACATCTTGTCCAGATT
GTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAA
CATCG
Found at i:26951 original size:401 final size:398
Alignment explanation
Indices: 26201--27016 Score: 1409
Period size: 401 Copynumber: 2.0 Consensus size: 398
26191 AAAAAGTGTA
*
26201 AAAACACATAATTATAATATAATAGGTAAATTATTAATGTAACTGGTCTAAATATACCGGTTTTT
1 AAAA-ACATAATTATAATATAATAGGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTT
*
26266 TAGAAAACAAGTGTACAAAAAGAATCGACACAAATAAAAAATGTCGATACATCTTGTCCAGATTA
65 GAGAAAACAAGTGTACAAAAAGAATCGACACAAATAAAAAATGTCGATACATCTTGTCCAGATTA
*
26331 TATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAAAAGTGTCGATCCCGAAAAC
130 TATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAAAAGTGTCGATCACGAAAAC
*
26396 ATCGAAAAATATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACATGTT
195 ATCGAAAAATATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACACGTT
26461 TTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGATACATCTTGTCCA
260 TTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGATACATCTTGTCCA
*
26526 GATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTAAATACATTTAAAACAAGTGTTGATCCCG
325 GATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTAAATACATTTAAAACAAGTGTCGATCCCG
26591 AAAACATCG
390 AAAACATCG
* * *
26600 AAAAACATCATTATAATGTAATATGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTTG
1 AAAAACATAATTATAATATAATAGGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTTG
* *
26665 AGAAAACATGTGTACAAAAAGAATTGACACAAATAAAAAAAAGTGTCGATACATCTTGTCCAGAT
66 AGAAAACAAGTGTACAAAAAGAATCGACACAAAT--AAAAAA-TGTCGATACATCTTGTCCAGAT
* * * *
26730 TGTATTTTAAAAACCAAGTGTACAACAAAGTGTCGCTACATTTAAAACAAGTGTCGATCACGAAA
128 TATATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAAAAGTGTCGATCACGAAA
*
26795 ACATCGAAAAATATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTTTAAATATAC-CG
193 ACATCGAAAAATATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACACG
*
26859 ATTTTTGAGAAAACAGGTGTACAAAAAGTATCGAGACAAATAAAAAAAGTGTCGATACATCTTGT
258 -TTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGATACATCTTGT
* **
26924 CCATATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACAAGTGTCGATC
322 CCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTAAATACATTTAAAACAAGTGTCGATC
26989 CCGAAAACATCG
387 CCGAAAACATCG
27001 AAAAACATAATTATAA
1 AAAAACATAATTATAA
27017 CCAAATGTCT
Statistics
Matches: 393, Mismatches: 20, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
398 88 0.22
399 4 0.01
400 7 0.02
401 294 0.75
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.28
Consensus pattern (398 bp):
AAAAACATAATTATAATATAATAGGTAAATTATTAATGTAACCGGTCTAAATATACCGGTTTTTG
AGAAAACAAGTGTACAAAAAGAATCGACACAAATAAAAAATGTCGATACATCTTGTCCAGATTAT
ATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAAAAGTGTCGATCACGAAAACA
TCGAAAAATATAATTATAATGTAATAAGTAAATTATTAATGTAACCGGTCTAAATATACACGTTT
TTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGATACATCTTGTCCAG
ATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTAAATACATTTAAAACAAGTGTCGATCCCGA
AAACATCG
Found at i:30079 original size:87 final size:87
Alignment explanation
Indices: 29977--30226 Score: 455
Period size: 87 Copynumber: 2.9 Consensus size: 87
29967 AAATAGGTCA
29977 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
*
30042 CCGGTTAAATGTCTATTTTATT
66 CCGGTTAAATGCCTATTTTATT
* *
30064 ATATAAGCGTTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTATTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
30129 CCGGTTAAATGCCTATTTTATT
66 CCGGTTAAATGCCTATTTTATT
* *
30151 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
30216 CCGGTTAAATG
66 CCGGTTAAATG
30227 ATATAACATA
Statistics
Matches: 156, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 156 1.00
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.42
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGGTTAAATGCCTATTTTATT
Found at i:30111 original size:23 final size:23
Alignment explanation
Indices: 30061--30105 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
30051 TGTCTATTTT
* *
30061 ATTATATAAGCGTTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
30084 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
30106 TGTTATTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:30198 original size:23 final size:23
Alignment explanation
Indices: 30148--30192 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
30138 TGCCTATTTT
*
30148 ATTATATAAACGCTACCTATTAC
1 ATTATATAAACGCTACCTAATAC
*
30171 ATTATATAAGCGCTACCTAATA
1 ATTATATAAACGCTACCTAATA
30193 TGTTATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (23 bp):
ATTATATAAACGCTACCTAATAC
Found at i:31248 original size:36 final size:36
Alignment explanation
Indices: 31177--31249 Score: 87
Period size: 36 Copynumber: 2.0 Consensus size: 36
31167 GTTGAAAAAT
* *
31177 ATTTATATGTTTTTTTAAAAAAATTAAATTCATAAA
1 ATTTATATATTTTTTTAAAAAAATTAAAATCATAAA
*
31213 ATTTATATAATTTTTTT-ACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTTTTAAAAAAATT-AAAATCATAAA
31249 A
1 A
31250 ATATTTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 21 0.66
37 11 0.34
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (36 bp):
ATTTATATATTTTTTTAAAAAAATTAAAATCATAAA
Found at i:31800 original size:23 final size:23
Alignment explanation
Indices: 31754--31836 Score: 82
Period size: 23 Copynumber: 3.6 Consensus size: 23
31744 ATTTAGTATC
31754 TAAA-TTATTATTTTATTTTATTT
1 TAAATTTATT-TTTTATTTTATTT
31777 TAATATTTATTTTTTATTTT-TTT
1 TAA-ATTTATTTTTTATTTTATTT
* * *
31800 TAAA-TTATATTTAATGTTTAGTT
1 TAAATTTATTTTTTAT-TTTATTT
31823 TAAATTTCATTTTT
1 TAAATTT-ATTTTT
31837 ATACTAAGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
21 9 0.18
22 4 0.08
23 15 0.30
24 12 0.24
25 10 0.20
ACGTcount: A:0.29, C:0.01, G:0.02, T:0.67
Consensus pattern (23 bp):
TAAATTTATTTTTTATTTTATTT
Found at i:32116 original size:15 final size:16
Alignment explanation
Indices: 32071--32120 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
32061 AAAATAAAAA
32071 AATTGAAAGTTAAAGT
1 AATTGAAAGTTAAAGT
*
32087 GATT-AAA-TTAGAAGT
1 AATTGAAAGTTA-AAGT
32102 AATTGAAAGTT-AAGT
1 AATTGAAAGTTAAAGT
32117 AATT
1 AATT
32121 AAATTTGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
14 3 0.10
15 18 0.62
16 6 0.21
17 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (16 bp):
AATTGAAAGTTAAAGT
Found at i:37892 original size:131 final size:129
Alignment explanation
Indices: 37586--37952 Score: 464
Period size: 130 Copynumber: 2.8 Consensus size: 129
37576 AATAATTTTA
* ** * * *
37586 AGAGAGAAAATGATAATATCTAATTATTTCCAATTAAGAATAAATGAACTTTCATGCCTTAAAAT
1 AGAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGT
* * * * * *
37651 AATCATTTATTACCCCAATTGAAATGAAAATATATCACTATTTCGTCTTAAATTCAATATTGATT
66 AGTCA-TTATTACTCCAATCGAAATGAAAAGATATCACTATTTCATCTTAAAATCAATATTGATT
* * * * *
37716 CGAGTGAAAACGATAATATCTAATGATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGC
1 AGAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGT
* * *
37781 AGTTATTCATTGCTCCAATCGAAATGAAGAGATATCACTATTTCATCTTAAAAATCAATATTGAT
66 AGTCATT-ATTACTCCAATCGAAATGAAAAGATATCACTATTTCATCTT-AAAATCAATATTGAT
37846 T
129 T
* * * *
37847 AGAGAGAAAACGGTAATATCGAATTATTTCCAATCGAGAATAAATGACATCTCATGGCTTAAAGT
1 AGAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGT
* * *
37912 AGTCATTATTACTCCAACCGAAATTAAAAGATATTACTATT
66 AGTCATTATTACTCCAATCGAAATGAAAAGATATCACTATT
37953 CTTGATATCG
Statistics
Matches: 200, Mismatches: 35, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
129 2 0.01
130 121 0.61
131 77 0.38
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.32
Consensus pattern (129 bp):
AGAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGT
AGTCATTATTACTCCAATCGAAATGAAAAGATATCACTATTTCATCTTAAAATCAATATTGATT
Found at i:40622 original size:28 final size:27
Alignment explanation
Indices: 40590--40658 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 27
40580 ATAAAGAATA
*
40590 AAAATAAATAAAACTT-GGGGACTAAATT
1 AAAATAAATAAAA-TTAAGGGAC-AAATT
*
40618 AAAATAAACTAAAATTACATGGACAAATT
1 AAAATAAA-TAAAATTA-AGGGACAAATT
40647 AAAATAAATAAA
1 AAAATAAATAAA
40659 TAAAAACAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
28 14 0.39
29 18 0.50
30 4 0.11
ACGTcount: A:0.61, C:0.07, G:0.09, T:0.23
Consensus pattern (27 bp):
AAAATAAATAAAATTAAGGGACAAATT
Found at i:42499 original size:242 final size:252
Alignment explanation
Indices: 42017--42619 Score: 789
Period size: 242 Copynumber: 2.4 Consensus size: 252
42007 TTTATTCATA
** * *
42017 TATTGAATAAAAATATTTTTTTTATTATTTCGGGTCGGGTTTTTAATTCATATATTCGGGTCGGG
1 TATTGAAT--AAATA-TTTTTTTACGATGTCGGGTCGGGTTTCTAATTCATATATTCGGGTCGGG
* * *
42082 TCGGGTGAAACTTTATTTTGGTCGGGTCGGGTCGGTTTTTTTAAGTGTGCTATTTGGTTTGGGTC
63 TCGGGTGAAACTTTATTTTGGTCGGGTCGGGT--GTTTTTTTAAGTGTGATATTGGGTCTGGGTC
*
42147 GAGTTCGGGTTTAGGGTGAAAAATACCCGACCCGACCCGAAAATATATATAATTTTACCTTATAT
126 GAGTTCGGGTTTAGGGTGAAAAATA-CCGA-CCGACCCGAAAAAATATATAATTTTACCTTATAT
*
42212 ATTTAGGAATAATTACAATAATACCCTTCTATATATAATTTTTTTC-AATTAAGTCACTGTTTT
189 ATTTAGGAATAATTACAATAATACCCCTCTATATATAATTTTTTTCTAATTAAGTCACTGTTTT
*
42275 TATTGAAT-AGT-TTTTATTT-CGA-GTCGGGTCGGGTTTCTAATTCATATATTCGGGTCGGGTC
1 TATTGAATAAATATTTT-TTTACGATGTCGGGTCGGGTTTCTAATTCATATATTCGGGTCGGGTC
* *
42336 GGGTGAAACTTTATTTTGGTCGGGT-TGGT-TTTTTTTAAGTGTGATATTCGGGTCT-GGTCGGG
65 GGGTGAAACTTTATTTTGGTCGGGTCGGGTGTTTTTTTAAGTGTGATATT-GGGTCTGGGTCGAG
*
42398 TTCGGGTTTAGGGTGAAAAATA-C-A-TGACCC-AAAAAATATATAATTTTACCTTATATATTTA
129 TTCGGGTTTAGGGTGAAAAATACCGACCGACCCGAAAAAATATATAATTTTACCTTATATATTTA
* *
42459 GGAATAATTACAATAATACCCCTCTCTATATATTTTTTTTCTAATTAAGTCACTGTTTT
194 GGAATAATTACAATAATACCCCTCTATATATAATTTTTTTCTAATTAAGTCACTGTTTT
** * *
42518 TATTGAATAAAAATAATTTTTTTATTATTTCGGGTTGGGTTTCTAATTCATATATTTGGGTCGGG
1 TATTGAAT--AAAT-ATTTTTTTACGATGTCGGGTCGGGTTTCTAATTCATATA--T---TCGGG
*
42583 TCGGGTCAGGTGAAACTTTATTTTGGTCGGGTCGGGT
58 TCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGGGT
42620 CTCGAATGGA
Statistics
Matches: 307, Mismatches: 22, Indels: 35
0.84 0.06 0.10
Matches are distributed among these distances:
242 68 0.22
243 30 0.10
245 1 0.00
246 3 0.01
247 3 0.01
248 51 0.17
249 28 0.09
251 4 0.01
252 62 0.20
253 5 0.02
254 39 0.13
255 5 0.02
258 8 0.03
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (252 bp):
TATTGAATAAATATTTTTTTACGATGTCGGGTCGGGTTTCTAATTCATATATTCGGGTCGGGTCG
GGTGAAACTTTATTTTGGTCGGGTCGGGTGTTTTTTTAAGTGTGATATTGGGTCTGGGTCGAGTT
CGGGTTTAGGGTGAAAAATACCGACCGACCCGAAAAAATATATAATTTTACCTTATATATTTAGG
AATAATTACAATAATACCCCTCTATATATAATTTTTTTCTAATTAAGTCACTGTTTT
Found at i:43212 original size:3 final size:3
Alignment explanation
Indices: 43204--43253 Score: 66
Period size: 3 Copynumber: 16.3 Consensus size: 3
43194 AAAACTTGAA
*
43204 AAT AAT AAT AAT AAT AAT AAT AAT AACT ACA- ATT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T A-AT AAT AAT AAT AAT AAT
43250 AAT A
1 AAT A
43254 TTAAAAATGG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
3 39 0.93
4 2 0.05
5 1 0.02
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:46632 original size:11 final size:11
Alignment explanation
Indices: 46616--46640 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
46606 TAGAGCAGAA
46616 AACGCAGCCTG
1 AACGCAGCCTG
46627 AACGCAGCCTG
1 AACGCAGCCTG
46638 AAC
1 AAC
46641 TGTTGCTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.36, G:0.24, T:0.08
Consensus pattern (11 bp):
AACGCAGCCTG
Found at i:46876 original size:45 final size:45
Alignment explanation
Indices: 46827--47067 Score: 374
Period size: 45 Copynumber: 5.4 Consensus size: 45
46817 CTTGAGGTAA
*
46827 TGGAGATGGTAAGTGATGTATTGGAGATGTTGATGAATGTTGAGG
1 TGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATGTTGAGG
* * *
46872 TGGAGATGATAAGTGATGTAGTGGAGATGGTGATGAATGTTGAGA
1 TGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATGTTGAGG
* *
46917 TGGAGATGGTAAGTGATGTAGTGGAGATGTTGATAAATTTTGAGG
1 TGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATGTTGAGG
* *
46962 TGGAGATGGTAAGTGATGTAGTGGAGATGGTGATGAATGTTGAGA
1 TGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATGTTGAGG
* *
47007 TGGAGATGGTAAGTGATGTGGTGGAGATGTTGATGAATTTTGAGG
1 TGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATGTTGAGG
**
47052 ACGAGATGGTAAGTGA
1 TGGAGATGGTAAGTGA
47068 CGTAATAGAG
Statistics
Matches: 177, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 177 1.00
ACGTcount: A:0.29, C:0.00, G:0.40, T:0.31
Consensus pattern (45 bp):
TGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATGTTGAGG
Found at i:46942 original size:90 final size:90
Alignment explanation
Indices: 46826--47067 Score: 421
Period size: 90 Copynumber: 2.7 Consensus size: 90
46816 GCTTGAGGTA
* * *
46826 ATGGAGATGGTAAGTGATGTATTGGAGATGTTGATGAATGTTGAGGTGGAGATGATAAGTGATGT
1 ATGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATTTTGAGGTGGAGATGGTAAGTGATGT
46891 AGTGGAGATGGTGATGAATGTTGAG
66 AGTGGAGATGGTGATGAATGTTGAG
*
46916 ATGGAGATGGTAAGTGATGTAGTGGAGATGTTGATAAATTTTGAGGTGGAGATGGTAAGTGATGT
1 ATGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATTTTGAGGTGGAGATGGTAAGTGATGT
46981 AGTGGAGATGGTGATGAATGTTGAG
66 AGTGGAGATGGTGATGAATGTTGAG
* **
47006 ATGGAGATGGTAAGTGATGTGGTGGAGATGTTGATGAATTTTGAGGACGAGATGGTAAGTGA
1 ATGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATTTTGAGGTGGAGATGGTAAGTGA
47068 CGTAATAGAG
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 144 1.00
ACGTcount: A:0.29, C:0.00, G:0.40, T:0.31
Consensus pattern (90 bp):
ATGGAGATGGTAAGTGATGTAGTGGAGATGTTGATGAATTTTGAGGTGGAGATGGTAAGTGATGT
AGTGGAGATGGTGATGAATGTTGAG
Found at i:49471 original size:31 final size:31
Alignment explanation
Indices: 49435--49493 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
49425 AACTTAAAAG
* *
49435 AGTTTTGCAATACTGAAATTTAAATAATTTT
1 AGTTTTACAATACTAAAATTTAAATAATTTT
*
49466 AGTTTTATAATACTAAAATTTAAATAAT
1 AGTTTTACAATACTAAAATTTAAATAAT
49494 CCATACAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (31 bp):
AGTTTTACAATACTAAAATTTAAATAATTTT
Found at i:49542 original size:22 final size:22
Alignment explanation
Indices: 49517--49794 Score: 378
Period size: 22 Copynumber: 12.6 Consensus size: 22
49507 ATAATAAATT
**
49517 TTTTAAAATAAATCAATTTATA
1 TTTTAAAATAAATCAATCCATA
49539 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
49561 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
49583 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
49605 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
* ***
49627 TTTTAAAATAATTTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
*
49649 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
* *** *
49671 TTTTAAAATAATTTTTTTTCATA
1 TTTTAAAATAA-ATCAATCCATA
49694 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
**
49716 TTTTAAAATAAAAT-TTTCCATA
1 TTTTAAAAT-AAATCAATCCATA
*
49738 TTTTAAAATAAATCAATCTATA
1 TTTTAAAATAAATCAATCCATA
**
49760 TTTTAAAATAAATCAATTTATA
1 TTTTAAAATAAATCAATCCATA
49782 TTTTAAAATAAAT
1 TTTTAAAATAAAT
49795 TTTAAAATAG
Statistics
Matches: 227, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
21 4 0.02
22 201 0.89
23 22 0.10
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.43
Consensus pattern (22 bp):
TTTTAAAATAAATCAATCCATA
Found at i:49818 original size:133 final size:131
Alignment explanation
Indices: 49517--49794 Score: 355
Period size: 133 Copynumber: 2.1 Consensus size: 131
49507 ATAATAAATT
* * * *** *
49517 TTTTAAAATAAATCAATTTATATTTTAAAATAA-ATCAATCCATATTTTAAAATAAATCAATCCA
1 TTTTAAAATAAATCAA-TAATAATTTAAAATAATTTTTTTTCATATTTTAAAATAAATCAATCCA
**
49581 TATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAATTTTTTCC
65 TATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAATAATTT-C
49646 ATA
129 ATA
* *
49649 TTTTAAAATAAATCAATTCATATTTTAAAATAATTTTTTTTCATATTTTAAAATAAATCAATCCA
1 TTTTAAAATAAATCAA-TAATAATTTAAAATAATTTTTTTTCATATTTTAAAATAAATCAATCCA
** *
49714 TATTTTAAAATAAAAT-TTTCCATATTTTAAAATAAATCAATCTATATTTTAAAATAAATCAATT
65 TATTTTAAAAT-AAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAAT-AAT-AATT
49778 T-ATA
127 TCATA
49782 TTTTAAAATAAAT
1 TTTTAAAATAAAT
49795 TTTAAAATAG
Statistics
Matches: 131, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
132 32 0.24
133 89 0.68
134 7 0.05
135 3 0.02
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.43
Consensus pattern (131 bp):
TTTTAAAATAAATCAATAATAATTTAAAATAATTTTTTTTCATATTTTAAAATAAATCAATCCAT
ATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAATAATTTCAT
A
Found at i:51989 original size:121 final size:121
Alignment explanation
Indices: 51853--52221 Score: 643
Period size: 121 Copynumber: 3.1 Consensus size: 121
51843 AGAAACGCAT
51853 AGAAAACACAACTACAATAGAAAACTCAACAATAGAACCAAAAACCAACAATTGAGCAACAATTG
1 AGAAAACACAACTACAATAGAAAACTCAACAATAGAACCAAAAACCAACAATTGAGCAACAATTG
51918 ACGAGAGCGAATGAACACCGGAAAACTGGAAAAAAAATGAATCGGAGCGAAGCGGA
66 ACGAGAGCGAATGAACACCGGAAAACTGGAAAAAAAATGAATCGGAGCGAAGCGGA
51974 AGAAAACACAACTACAATAGAAAACTCAACAATAGAACCAAAAACCAACAATTGAGCAACAATTG
1 AGAAAACACAACTACAATAGAAAACTCAACAATAGAACCAAAAACCAACAATTGAGCAACAATTG
52039 ACGAGAGCGAATGAACACCGGAAAACTGGAAAAAAAATGAATCGGAGCGAAGCGGA
66 ACGAGAGCGAATGAACACCGGAAAACTGGAAAAAAAATGAATCGGAGCGAAGCGGA
*
52095 AGAAAACACAACTACAATAGAAAACTCAACAATAG-A-C-----CCAA-AA---ACCAACAATTG
1 AGAAAACACAACTACAATAGAAAACTCAACAATAGAACCAAAAACCAACAATTGAGCAACAATTG
52149 ACGAGAGCGAATGAACACCGGAAAACTGGAAAAAAAAATGAATCGGAGCGAAGCGGA
66 ACGAGAGCGAATGAACACCGGAAAACTGG-AAAAAAAATGAATCGGAGCGAAGCGGA
52206 AGAAAACACAACTACA
1 AGAAAACACAACTACA
52222 GGATCTTTGG
Statistics
Matches: 246, Mismatches: 1, Indels: 12
0.95 0.00 0.05
Matches are distributed among these distances:
110 39 0.16
111 43 0.17
113 2 0.01
114 4 0.02
119 1 0.00
120 1 0.00
121 156 0.63
ACGTcount: A:0.53, C:0.20, G:0.18, T:0.09
Consensus pattern (121 bp):
AGAAAACACAACTACAATAGAAAACTCAACAATAGAACCAAAAACCAACAATTGAGCAACAATTG
ACGAGAGCGAATGAACACCGGAAAACTGGAAAAAAAATGAATCGGAGCGAAGCGGA
Found at i:53997 original size:37 final size:37
Alignment explanation
Indices: 53925--53999 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
53915 GTTGAAAAAT
* *
53925 ATTTATATATTTTCTTTAAAAAATTTAAATTTATAAA
1 ATTTATATATTTTCTTTAAAAAATTGAAATATATAAA
*
53962 ATTTATATATATATT-TTTACAAAATTGAAA-ATATAAA
1 ATTTATATAT-T-TTCTTTAAAAAATTGAAATATATAAA
53999 A
1 A
54000 AGGTTTAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 17 0.52
38 14 0.42
39 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (37 bp):
ATTTATATATTTTCTTTAAAAAATTGAAATATATAAA
Found at i:55037 original size:60 final size:59
Alignment explanation
Indices: 54963--55126 Score: 188
Period size: 60 Copynumber: 2.7 Consensus size: 59
54953 TATAATTTGA
* *
54963 GATGAAATTAAAATGCTTAAAAAGTTTGGGAACATTTTAGAATGA-AGATTATAGTTTGGG
1 GATGAAATTAAAATG-TTAAAAAGTTTGGGAACAATTTAGAATGATAG-TTATAGTTTAGG
* * * *
55023 GATGAAACTAAAATGTTCAGAAGTTTGAGG-ACTAATTTATAATGATAGTTATAGTTTAGG
1 GATGAAATTAAAATGTTAAAAAGTTTG-GGAAC-AATTTAGAATGATAGTTATAGTTTAGG
* * *
55083 GATGAAATTAGAATGTTTAAAAGTTTAGGGACCAATTTAGAATG
1 GATGAAATTAAAATGTTAAAAAGTTT-GGGAACAATTTAGAATG
55127 TGGGTCATAA
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
59 12 0.14
60 71 0.82
61 4 0.05
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.34
Consensus pattern (59 bp):
GATGAAATTAAAATGTTAAAAAGTTTGGGAACAATTTAGAATGATAGTTATAGTTTAGG
Found at i:59014 original size:26 final size:27
Alignment explanation
Indices: 58961--59020 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 27
58951 AATTATCTAG
* * *
58961 AATTTTATAAGTTTCATCCCCTCTTAA
1 AATTTTAAAAGTTTCATCCCATCATAA
*
58988 AATTTTAAAAGTTT-ATCCTATCATAA
1 AATTTTAAAAGTTTCATCCCATCATAA
59014 AATTTTA
1 AATTTTA
59021 CGTCCGTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 16 0.55
27 13 0.45
ACGTcount: A:0.37, C:0.15, G:0.03, T:0.45
Consensus pattern (27 bp):
AATTTTAAAAGTTTCATCCCATCATAA
Found at i:60127 original size:3 final size:3
Alignment explanation
Indices: 60107--60156 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
60097 TTTAATACTT
* * *
60107 TGA TGT TGA TGT TGA TGA TGA TGA TGA TGA TGA TGA TAA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
60155 TG
1 TG
60157 GTGGTGGTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.30, C:0.00, G:0.32, T:0.38
Consensus pattern (3 bp):
TGA
Found at i:60780 original size:21 final size:21
Alignment explanation
Indices: 60754--60806 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
60744 GTTTTCAGAT
60754 TCGCAACGCGAACATCGACTA
1 TCGCAACGCGAACATCGACTA
*
60775 TCGCAACGCGAACTTCGACTA
1 TCGCAACGCGAACATCGACTA
*
60796 TCGCAATGCGA
1 TCGCAACGCGA
60807 TTTTCTAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.17
Consensus pattern (21 bp):
TCGCAACGCGAACATCGACTA
Found at i:60855 original size:23 final size:23
Alignment explanation
Indices: 60829--60893 Score: 112
Period size: 23 Copynumber: 2.8 Consensus size: 23
60819 GTTGTGATAG
* *
60829 TCCAAGTTCGCGTTTCGATTTAT
1 TCCAAATTCGCGTTGCGATTTAT
60852 TCCAAATTCGCGTTGCGATTTAT
1 TCCAAATTCGCGTTGCGATTTAT
60875 TCCAAATTCGCGTTGCGAT
1 TCCAAATTCGCGTTGCGAT
60894 AGTCGAAGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (23 bp):
TCCAAATTCGCGTTGCGATTTAT
Found at i:61694 original size:6 final size:6
Alignment explanation
Indices: 61683--61714 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
61673 TCGTCTCGTC
61683 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TC
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TC
61715 ATACGTGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.19, G:0.47, T:0.34
Consensus pattern (6 bp):
TCGTGG
Found at i:63913 original size:21 final size:21
Alignment explanation
Indices: 63862--63914 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
63852 ATTCTGACTA
63862 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* * *
63883 TTGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
63904 TCGCAATGCGA
1 TCGCATTGCGA
63915 ATACGTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:63966 original size:20 final size:20
Alignment explanation
Indices: 63904--63969 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
63894 TTTTCCTAAT
63904 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
** *
63924 TCATAATGTGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
63944 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
63964 TCGCAA
1 TCGCAA
63970 CGCAAATCTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:64026 original size:20 final size:20
Alignment explanation
Indices: 63963--64029 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
63953 GAATACGTAA
* *
63963 ATCGCAACGCAAATCTGACT
1 ATCGCAACGCGATTCTGACT
* *
63983 ATCACAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
64003 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
64023 ATCGCAA
1 ATCGCAA
64030 TACTGAATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.22
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:64879 original size:24 final size:24
Alignment explanation
Indices: 64852--64905 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
64842 GTATTCGAAA
64852 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
64876 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
64900 TTTGAT
1 TTTGAT
64906 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:67818 original size:21 final size:22
Alignment explanation
Indices: 67768--67845 Score: 63
Period size: 21 Copynumber: 3.6 Consensus size: 22
67758 AATGTTGGGA
* *
67768 GGGACCTCTTCAAC-GATGACAG
1 GGGA-CTCTTGAACGGATGATAG
* * *
67790 TGGCCTCTTGAACGG-TGGTAG
1 GGGACTCTTGAACGGATGATAG
*
67811 GGGACTCTTG-AGGGATGATAG
1 GGGACTCTTGAACGGATGATAG
*
67832 GGGCCTCTTGAACG
1 GGGACTCTTGAACG
67846 ATAGGGGAGG
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
20 3 0.07
21 34 0.81
22 5 0.12
ACGTcount: A:0.21, C:0.21, G:0.36, T:0.23
Consensus pattern (22 bp):
GGGACTCTTGAACGGATGATAG
Found at i:67870 original size:42 final size:41
Alignment explanation
Indices: 67765--67872 Score: 110
Period size: 42 Copynumber: 2.6 Consensus size: 41
67755 TAGAATGTTG
* * * *
67765 GGAGGGACCTCTTCAACGATGACAGTGGCCTCTTGAACGGT
1 GGAGGGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGAT
* ** *
67806 GGTAGGGGACTCTTGAGGGATGATAGGGGCCTCTTGAACGAT
1 GG-AGGGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGAT
67848 AGG-GGAGGCCTCTTGAACGATGACA
1 -GGAGG-GGCCTCTTGAACGATGACA
67873 AGTGAGTCGG
Statistics
Matches: 52, Mismatches: 12, Indels: 5
0.75 0.17 0.07
Matches are distributed among these distances:
41 4 0.08
42 46 0.88
43 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.21
Consensus pattern (41 bp):
GGAGGGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGAT
Found at i:68376 original size:20 final size:20
Alignment explanation
Indices: 68353--68441 Score: 124
Period size: 20 Copynumber: 4.5 Consensus size: 20
68343 GAAACTTAAA
68353 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
68373 ATCGTAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* *
68393 ATCGCAATGCAAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
68413 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
68433 ATCGCAACG
1 ATCGCAACG
68442 AGAGAATCTC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:68509 original size:34 final size:35
Alignment explanation
Indices: 68466--68576 Score: 107
Period size: 40 Copynumber: 2.9 Consensus size: 35
68456 CTATTTTCAT
68466 TTCGCATTGCGATTC-TTTCGTTGCGATAGTCAAA
1 TTCGCATTGCGATTCATTTCGTTGCGATAGTCAAA
**
68500 TTCGCATTGCGATAGTCATTTTCGCATTGCGATAGTCATT
1 TTCGCATTGCGAT--TCA-TTTCG--TTGCGATAGTCAAA
*
68540 TTCGCGTTGCGATTTTCATTTCGCGTTGCGATAGTCA
1 TTCGCATTGCGA--TTCATTT--CGTTGCGATAGTCA
68577 TTTTCGCGTT
Statistics
Matches: 64, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
34 13 0.20
36 2 0.03
38 5 0.08
39 15 0.23
40 26 0.41
41 2 0.03
42 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.40
Consensus pattern (35 bp):
TTCGCATTGCGATTCATTTCGTTGCGATAGTCAAA
Found at i:68511 original size:20 final size:20
Alignment explanation
Indices: 68486--68614 Score: 179
Period size: 20 Copynumber: 6.5 Consensus size: 20
68476 GATTCTTTCG
**
68486 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
68506 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
68526 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
** *
68546 TTGCGATTTTCA-TTTCGCG
1 TTGCGATAGTCATTTTCGCA
*
68565 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
*
68585 TTGTGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
68605 TTGCGATAGT
1 TTGCGATAGT
68615 AAACTATTCT
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
19 17 0.17
20 81 0.83
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:68569 original size:59 final size:59
Alignment explanation
Indices: 68500--68611 Score: 188
Period size: 59 Copynumber: 1.9 Consensus size: 59
68490 GATAGTCAAA
*
68500 TTCGCATTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTCGCATTGCGATTTTCAT
* * *
68559 TTCGCGTTGCGATAGTCATTTTCGCGTTGTGATAGTCATTTTCGCATTGCGAT
1 TTCGCATTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTCGCATTGCGAT
68612 AGTAAACTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (59 bp):
TTCGCATTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTCGCATTGCGATTTTCAT
Found at i:69164 original size:18 final size:18
Alignment explanation
Indices: 69141--69190 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
69131 CGGGTCGATC
69141 AGGTGATGGCTCTGAGTG
1 AGGTGATGGCTCTGAGTG
*
69159 AGGTGATGGCTCTAAGTG
1 AGGTGATGGCTCTGAGTG
69177 AGGTGATGGCTCTG
1 AGGTGATGGCTCTG
69191 GAAGTGGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.18, C:0.12, G:0.42, T:0.28
Consensus pattern (18 bp):
AGGTGATGGCTCTGAGTG
Found at i:69199 original size:18 final size:18
Alignment explanation
Indices: 69141--69206 Score: 75
Period size: 18 Copynumber: 3.7 Consensus size: 18
69131 CGGGTCGATC
69141 AGGTGATGGCTCTG-AGT
1 AGGTGATGGCTCTGAAGT
69158 GAGGTGATGGCTCT-AAGT
1 -AGGTGATGGCTCTGAAGT
69176 GAGGTGATGGCTCTGGAAGT
1 -AGGTGATGGCTCT-GAAGT
*
69196 -GGTGATTGCTC
1 AGGTGATGGCTC
69207 ATCATCCGTG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
18 40 0.91
20 4 0.09
ACGTcount: A:0.18, C:0.12, G:0.41, T:0.29
Consensus pattern (18 bp):
AGGTGATGGCTCTGAAGT
Found at i:70579 original size:19 final size:19
Alignment explanation
Indices: 70520--70682 Score: 138
Period size: 20 Copynumber: 8.6 Consensus size: 19
70510 TCTAAAACTT
*
70520 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCG-AAATG
* *
70540 AAAAGCGCAACACGAAAATG
1 AAAATCGCAACGCG-AAATG
**
70560 ACTATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
70579 AAAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
*
70598 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCG-AAATG
** * *
70618 ACTATCGTAACGCGAATTTG
1 AAAATCGCAACGCGAA-ATG
**
70638 ACTATCGCAACGC--AA-G
1 AAAATCGCAACGCGAAATG
*
70654 --AATCGCAAAGCGAAATG
1 AAAATCGCAACGCGAAATG
70671 AAAATCGCAACG
1 AAAATCGCAACG
70683 ACAGAATCGC
Statistics
Matches: 118, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
14 9 0.08
16 3 0.03
17 1 0.01
18 1 0.01
19 46 0.39
20 58 0.49
ACGTcount: A:0.46, C:0.22, G:0.19, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:70611 original size:58 final size:59
Alignment explanation
Indices: 70520--70633 Score: 194
Period size: 58 Copynumber: 1.9 Consensus size: 59
70510 TCTAAAACTT
70520 AAAATCGCAACACGAAAATGAAAAGCGCAACACGAAAATGACTATCGCAACGCGAAATG
1 AAAATCGCAACACGAAAATGAAAAGCGCAACACGAAAATGACTATCGCAACGCGAAATG
* * *
70579 AAAATCGCAACGCG-AAATGAAAATCGCAACACGAAAATGACTATCGTAACGCGAA
1 AAAATCGCAACACGAAAATGAAAAGCGCAACACGAAAATGACTATCGCAACGCGAA
70634 TTTGACTATC
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
58 39 0.75
59 13 0.25
ACGTcount: A:0.48, C:0.22, G:0.18, T:0.11
Consensus pattern (59 bp):
AAAATCGCAACACGAAAATGAAAAGCGCAACACGAAAATGACTATCGCAACGCGAAATG
Found at i:70624 original size:20 final size:20
Alignment explanation
Indices: 70520--70618 Score: 139
Period size: 19 Copynumber: 5.0 Consensus size: 20
70510 TCTAAAACTT
70520 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
*
70540 AAAAGCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** *
70560 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
*
70579 AAAATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
70598 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
70618 A
1 A
70619 CTATCGTAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
19 35 0.50
20 35 0.50
ACGTcount: A:0.51, C:0.21, G:0.18, T:0.10
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:70649 original size:78 final size:73
Alignment explanation
Indices: 70520--70681 Score: 207
Period size: 78 Copynumber: 2.2 Consensus size: 73
70510 TCTAAAACTT
70520 AAAATCGCAACACGAAAATGAAAAGCGCAACACGAAAATGACTATCGCAACGCGAAATGAAAATC
1 AAAATCGCAACACGAAAATGAAAAGCGCAACACGAAAATGACTATCGCAACGC--AA-G--AATC
*
70585 GCAACGCGAAATG
61 GCAAAGCGAAATG
** * * * **
70598 AAAATCGCAACACGAAAATGACTATCGTAACGCGAATTTGACTATCGCAACGCAAGAATCGCAAA
1 AAAATCGCAACACGAAAATGAAAAGCGCAACACGAAAATGACTATCGCAACGCAAGAATCGCAAA
70663 GCGAAATG
66 GCGAAATG
70671 AAAATCGCAAC
1 AAAATCGCAAC
70682 GACAGAATCG
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
73 27 0.36
75 1 0.01
76 2 0.03
78 46 0.61
ACGTcount: A:0.46, C:0.22, G:0.19, T:0.13
Consensus pattern (73 bp):
AAAATCGCAACACGAAAATGAAAAGCGCAACACGAAAATGACTATCGCAACGCAAGAATCGCAAA
GCGAAATG
Found at i:71081 original size:22 final size:22
Alignment explanation
Indices: 71028--71084 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
71018 ATGATTTTGC
*
71028 CAGAGATGGAGACTGATATCGT
1 CAGAGATGGGGACTGATATCGT
*
71050 CAGAGATGGGGACTGATTTCGT
1 CAGAGATGGGGACTGATATCGT
*
71072 TAGAGATGGGGAC
1 CAGAGATGGGGAC
71085 GGATGTCGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.28, C:0.12, G:0.37, T:0.23
Consensus pattern (22 bp):
CAGAGATGGGGACTGATATCGT
Found at i:72583 original size:16 final size:15
Alignment explanation
Indices: 72562--72604 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
72552 TTAAAAACTA
72562 ATATTTTATTAATATT
1 ATATTTTATTAA-ATT
72578 ATATTTTAATTAAATT
1 ATATTTT-ATTAAATT
*
72594 ACATTTATATT
1 ATATTT-TATT
72605 TTTAACTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATTTTATTAAATT
Found at i:72594 original size:22 final size:21
Alignment explanation
Indices: 72569--72633 Score: 60
Period size: 23 Copynumber: 2.9 Consensus size: 21
72559 CTAATATTTT
72569 ATTAATATTATATTTTAATTAA
1 ATTAATATTATATTTTAATT-A
*
72591 ATTACAT-TTATATTTTTAACTA
1 ATTA-ATATTATA-TTTTAATTA
*
72613 ATTTATAATTATATATTTAAT
1 ATTAAT-ATTATAT-TTTAAT
72634 ATTTTATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
21 2 0.06
22 14 0.40
23 19 0.54
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTAATATTATATTTTAATTA
Found at i:72624 original size:23 final size:22
Alignment explanation
Indices: 72575--72657 Score: 71
Period size: 22 Copynumber: 3.7 Consensus size: 22
72565 TTTTATTAAT
* *
72575 ATTATA-TTTTAATTAAATTACA
1 ATTATATTTTTAA-TAATTTATA
*
72597 TTTATATTTTTAACTAATTTATA
1 ATTATATTTTTAA-TAATTTATA
* *
72620 ATTATATATTTAATATTTTATA
1 ATTATATTTTTAATAATTTATA
*
72642 ATT-TAATTTTTTATAA
1 ATTAT-ATTTTTAATAA
72658 ATTAATTTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
21 1 0.02
22 24 0.49
23 24 0.49
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTATATTTTTAATAATTTATA
Found at i:72647 original size:15 final size:15
Alignment explanation
Indices: 72621--72663 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
72611 TAATTTATAA
72621 TTATATATTTAATATT
1 TTATA-ATTTAATATT
*
72637 TTATAATTTAATTTT
1 TTATAATTTAATATT
*
72652 TTATAAATTAAT
1 TTATAATTTAAT
72664 TTAATAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 20 0.80
16 5 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTATAATTTAATATT
Found at i:73456 original size:3 final size:3
Alignment explanation
Indices: 73448--73474 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
73438 AGTAAAATAG
73448 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
73475 TTGTATTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:78350 original size:29 final size:29
Alignment explanation
Indices: 78308--78374 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
78298 TATGTTTATT
* * *
78308 TATTTAATCGGTTTCTAATTTGTATCTTG
1 TATTTATTTGGTTTCTAAATTGTATCTTG
*
78337 TATTTATTTGGTTTCTAAATTGTATGTTG
1 TATTTATTTGGTTTCTAAATTGTATCTTG
78366 TATTTATTT
1 TATTTATTT
78375 CAGTATATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.21, C:0.06, G:0.13, T:0.60
Consensus pattern (29 bp):
TATTTATTTGGTTTCTAAATTGTATCTTG
Found at i:84081 original size:16 final size:16
Alignment explanation
Indices: 84055--84109 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
84045 AATAATTAAT
84055 TAATAAATTTAAATAAA
1 TAAT-AATTTAAATAAA
*
84072 TAATAATTTATATAAA
1 TAATAATTTAAATAAA
* *
84088 T-ATTATTTTAATAAA
1 TAATAATTTAAATAAA
*
84103 AAATAAT
1 TAATAAT
84110 ATATATATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 11 0.35
16 16 0.52
17 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATAATTTAAATAAA
Found at i:84108 original size:31 final size:31
Alignment explanation
Indices: 84041--84122 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 31
84031 AATTAGCACA
*
84041 AAAAAATAA-TTA-ATTAATA-AATTTAAAT
1 AAAAAATAATTTATATAAATATAATTTAAAT
* * *
84069 AAATAATAATTTATATAAATATTATTTTAAT
1 AAAAAATAATTTATATAAATATAATTTAAAT
* *
84100 AAAAAATAATATATATATATATA
1 AAAAAATAATTTATATAAATATA
84123 TATATATAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
28 8 0.19
29 3 0.07
30 6 0.14
31 26 0.60
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (31 bp):
AAAAAATAATTTATATAAATATAATTTAAAT
Found at i:85281 original size:199 final size:196
Alignment explanation
Indices: 84848--85337 Score: 531
Period size: 199 Copynumber: 2.5 Consensus size: 196
84838 TAAATCGGTT
* * * *
84848 TATTTATACCGGTAAAATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGG
1 TATTTATACCGGTTACATT-TTAATTTACCTATTACA-TATAATTATCAGTTTCGATGTTTTTGG
* * *
84913 GATCGATACAATTT-TAAATGTATCGACACTTTATGCATGTATCTCGTTGGGCATTCATTCTGGA
64 GATCGATAC-TTTTATAAATGTATCGACACTTTATGCATGCACCTCGTTGGGCATTCATTCTGGA
* * * *
84977 AAAAAGTATCGAAACATATTTAAAAAGTGTCAATACATTATGTTGACATATCCTCTCATAAAATC
128 AAAAAGTATCGAAACAAATTCAAAAAGTGTCAATACATTATGTTGACATATCCTCTAATAAAACC
*
85042 GGTA
193 AGTA
* *
85046 TATTTATTCCGGTTACATTTTAAATTTACCTATTACATCATAATTATCAGTTTCGATGTTTTTGA
1 TATTTATACCGGTTACATTTT-AATTTACCTATTACAT-ATAATTATCAGTTTCGATGTTTTTGG
* * *
85111 GATCGATACTTTTAATAAATGTATCGGCACTTTATGCGTGCACCTCGTTTGGGCATTCATTTTGG
64 GATCGATACTTTT-ATAAATGTATCGACACTTTATGCATGCACCTCG-TTGGGCATTCATTCTGG
* * * * * * * * ** * *
85176 ACAATAGGTATCGACACAAATTCCACAAGTGTCGATACATTATGTTTATC-TGTTTTGTAAT-TA
127 A-AAAAAGTATCGAAACAAATTCAAAAAGTGTCAATACATTATGTTGA-CATATCCTCTAATAAA
85239 ACCAGTA
190 ACCAGTA
**
85246 TA-TTATACCGGTTACATTGTTAATTTACCTATTACAGTATAATTATTTGTTTCGATGTTTTTGG
1 TATTTATACCGGTTACATT-TTAATTTACCTATTACA-TATAATTATCAGTTTCGATGTTTTTGG
* * * *
85310 GGTTGATACTTTTAGAAA-ATATCGACAC
64 GATCGATACTTTTATAAATGTATCGACAC
85338 ATCTTTTTAC
Statistics
Matches: 245, Mismatches: 38, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
197 13 0.05
198 68 0.28
199 92 0.38
200 28 0.11
201 43 0.18
202 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (196 bp):
TATTTATACCGGTTACATTTTAATTTACCTATTACATATAATTATCAGTTTCGATGTTTTTGGGA
TCGATACTTTTATAAATGTATCGACACTTTATGCATGCACCTCGTTGGGCATTCATTCTGGAAAA
AAGTATCGAAACAAATTCAAAAAGTGTCAATACATTATGTTGACATATCCTCTAATAAAACCAGT
A
Found at i:88073 original size:19 final size:19
Alignment explanation
Indices: 88049--88095 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
88039 ACATTCACAT
88049 ACAAAATTATAAATCGTAA
1 ACAAAATTATAAATCGTAA
* *
88068 ACAAAATTATAAATCTTAT
1 ACAAAATTATAAATCGTAA
88087 ACAAAATTA
1 ACAAAATTA
88096 ACCCTACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (19 bp):
ACAAAATTATAAATCGTAA
Done.