Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001398.1 Hibiscus syriacus cultivar Beakdansim tig00002729_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 84855
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:3650 original size:39 final size:39
Alignment explanation
Indices: 3596--3671 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
3586 TGTGGAAGAA
*
3596 AGATTAAACATGCTTTCAACTTTTAATACAAGGAAAAAT
1 AGATTAAACATGCTTTCAACTTTTAACACAAGGAAAAAT
*
3635 AGATTAAACATGCTTTCAACTTTTAACACAATGAAAA
1 AGATTAAACATGCTTTCAACTTTTAACACAAGGAAAA
3672 GTATAGTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.30
Consensus pattern (39 bp):
AGATTAAACATGCTTTCAACTTTTAACACAAGGAAAAAT
Found at i:9162 original size:19 final size:19
Alignment explanation
Indices: 9138--9186 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
9128 ACAATCTAAG
*
9138 TTGGGTGTTAACCTGTTGA
1 TTGGGTGTTAACCTATTGA
9157 TTGGGTGTTAACCTATTGA
1 TTGGGTGTTAACCTATTGA
*
9176 TTAGGTGTTAA
1 TTGGGTGTTAA
9187 TCTCAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.20, C:0.08, G:0.29, T:0.43
Consensus pattern (19 bp):
TTGGGTGTTAACCTATTGA
Found at i:9961 original size:23 final size:23
Alignment explanation
Indices: 9914--9961 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
9904 AATAACATAT
**
9914 TAGGTACCGCTTATATAATGTAA
1 TAGGTACCGCTTATATAATAAAA
* *
9937 TAGGTAGCGTTTATATAATAAAA
1 TAGGTACCGCTTATATAATAAAA
9960 TA
1 TA
9962 TGTTAAGTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (23 bp):
TAGGTACCGCTTATATAATAAAA
Found at i:10052 original size:85 final size:85
Alignment explanation
Indices: 9886--10134 Score: 363
Period size: 85 Copynumber: 2.9 Consensus size: 85
9876 TCATTTAACC
* * *
9886 GGAAATATTACCAAGTACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGTTTAT
1 GGAAATATTATCAAGCACAATAACATATTAGGTACCGC-T-TATAATGTAATAGGTAGCGCTTAT
*
9951 ATAATAAAATATGTTAAGTACT
64 ATAATAAAATAGGTTAAGTACT
* * * * *
9973 GGAAACATTATCAAGCACAATAATATATTAGGTACCGCTTATAATGTAATATGTATCACTTATAT
1 GGAAATATTATCAAGCACAATAACATATTAGGTACCGCTTATAATGTAATAGGTAGCGCTTATAT
*
10038 AATAAAATAGGTTAATTACT
66 AATAAAATAGGTTAAGTACT
* * *
10058 GTAAATATTATCAAACACAATAACATATTAGGTAGCGCTTATAATGTAATAGGTAGCGCTTATAT
1 GGAAATATTATCAAGCACAATAACATATTAGGTACCGCTTATAATGTAATAGGTAGCGCTTATAT
10123 AATAAAATAGGT
66 AATAAAATAGGT
10135 AGCGCTATAT
Statistics
Matches: 144, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
85 109 0.76
86 1 0.01
87 34 0.24
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (85 bp):
GGAAATATTATCAAGCACAATAACATATTAGGTACCGCTTATAATGTAATAGGTAGCGCTTATAT
AATAAAATAGGTTAAGTACT
Found at i:10146 original size:22 final size:22
Alignment explanation
Indices: 10086--10199 Score: 171
Period size: 22 Copynumber: 5.2 Consensus size: 22
10076 AATAACATAT
**
10086 TAGGTAGCGCT-TATAATGTAA
1 TAGGTAGCGCTATATAATAAAA
10107 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGC-TATATAATAAAA
10130 TAGGTAGCGCTATATAATAAAA
1 TAGGTAGCGCTATATAATAAAA
10152 TAGGTAGCGCTTATATAAT-AAA
1 TAGGTAGCGC-TATATAATAAAA
10174 TAGGTAGCGCT-TATAATAAAA
1 TAGGTAGCGCTATATAATAAAA
10195 TAGGT
1 TAGGT
10200 TAATTACTGG
Statistics
Matches: 87, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
20 6 0.07
21 19 0.22
22 36 0.41
23 26 0.30
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (22 bp):
TAGGTAGCGCTATATAATAAAA
Found at i:10147 original size:45 final size:43
Alignment explanation
Indices: 10086--10199 Score: 192
Period size: 45 Copynumber: 2.6 Consensus size: 43
10076 AATAACATAT
**
10086 TAGGTAGCGCTTATAATGTAATAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATAATAAAATAGGTAGCGCTTATATAAT-AAA
10130 TAGGTAGCGCTATATAATAAAATAGGTAGCGCTTATATAATAAA
1 TAGGTAGCGCT-TATAATAAAATAGGTAGCGCTTATATAATAAA
10174 TAGGTAGCGCTTATAATAAAATAGGT
1 TAGGTAGCGCTTATAATAAAATAGGT
10200 TAATTACTGG
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
43 15 0.22
44 25 0.37
45 27 0.40
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (43 bp):
TAGGTAGCGCTTATAATAAAATAGGTAGCGCTTATATAATAAA
Found at i:10253 original size:23 final size:23
Alignment explanation
Indices: 10227--10286 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
10217 ATCAAGCACA
* *
10227 ATAATATATTAGGTACCGCTTAT
1 ATAATATAATAGGTACCACTTAT
* *
10250 ATAATGTAATAGGTAGCACTTAT
1 ATAATATAATAGGTACCACTTAT
*
10273 ATAATAAAATAGGT
1 ATAATATAATAGGT
10287 TAATTATTGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (23 bp):
ATAATATAATAGGTACCACTTAT
Found at i:10347 original size:21 final size:21
Alignment explanation
Indices: 10323--10381 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 21
10313 AATAACATAT
**
10323 TAGGTAGCGCTTATAATGTAA
1 TAGGTAGCGCTTATAATAAAA
*
10344 TAGGTAACGCTTATATAATAAAA
1 TAGGTAGCGC-T-TATAATAAAA
10367 TAGGTAGCGCTTATA
1 TAGGTAGCGCTTATA
10382 TAATAAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 13 0.41
22 2 0.06
23 17 0.53
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (21 bp):
TAGGTAGCGCTTATAATAAAA
Found at i:10348 original size:85 final size:87
Alignment explanation
Indices: 10152--10371 Score: 333
Period size: 87 Copynumber: 2.6 Consensus size: 87
10142 TATAATAAAA
*
10152 TAGGTAGCGCTTATATAAT-AAATAGGTAGCGC-T-TATAATAAAATAGGTTAATTACTGGAAAC
1 TAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGGAAAC
* *
10214 ATTATCAAGCACAATAATATAT
66 ATTATCAAACACAATAACATAT
* * *
10236 TAGGTACCGCTTATATAATGTAATAGGTAGCACTTATATAATAAAATAGGTTAATTATTGGAAAC
1 TAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGGAAAC
*
10301 ATTATCAAACATAATAACATAT
66 ATTATCAAACACAATAACATAT
*
10323 TAGGTAGCGC-T-TATAATGTAATAGGTAACGCTTATATAATAAAATAGGT
1 TAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGT
10372 AGCGCTTATA
Statistics
Matches: 123, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
84 18 0.15
85 47 0.38
86 2 0.02
87 56 0.46
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.32
Consensus pattern (87 bp):
TAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGGAAAC
ATTATCAAACACAATAACATAT
Found at i:10357 original size:237 final size:239
Alignment explanation
Indices: 9914--10388 Score: 796
Period size: 237 Copynumber: 2.0 Consensus size: 239
9904 AATAACATAT
* * *
9914 TAGGTACCGCTTATATAATGTAATAGGTAGCGTTTATATAATAAAATATGTTAAGTACTGGAAAC
1 TAGGTACCGCTTATATAATGAAATAGGTAGCGTCTATATAATAAAATAGGTTAAGTACTGGAAAC
* *
9979 ATTATCAAGCACAATAATATATTAGGTACCGCTTATAATGTAATATGTATCACTTATATAATAAA
66 ATTATCAAGCACAATAATATATTAGGTACCGCTTATAATGTAATAGGTAGCACTTATATAATAAA
* *
10044 ATAGGTTAATTACTGTAAATATTATCAAACACAATAACATATTAGGTAGCGCTTATAATGTAATA
131 ATAGGTTAATTACTGGAAACATTATCAAACACAATAACATATTAGGTAGCGCTTATAATGTAATA
*
10109 GGTAGCGCTTATATAATAAAATAGGTAGCGC-TATATAATAAAA
196 GGTAACGCTTATATAATAAAATAGGTAGCGCTTATATAATAAAA
* *
10152 TAGGTAGCGCTTATATAAT-AAATAGGTAGCG-CT-TATAATAAAATAGGTTAATTACTGGAAAC
1 TAGGTACCGCTTATATAATGAAATAGGTAGCGTCTATATAATAAAATAGGTTAAGTACTGGAAAC
10214 ATTATCAAGCACAATAATATATTAGGTACCGCTTATATAATGTAATAGGTAGCACTTATATAATA
66 ATTATCAAGCACAATAATATATTAGGTACCGC-T-TATAATGTAATAGGTAGCACTTATATAATA
* *
10279 AAATAGGTTAATTATTGGAAACATTATCAAACATAATAACATATTAGGTAGCGCTTATAATGTAA
129 AAATAGGTTAATTACTGGAAACATTATCAAACACAATAACATATTAGGTAGCGCTTATAATGTAA
10344 TAGGTAACGCTTATATAATAAAATAGGTAGCGCTTATATAATAAA
194 TAGGTAACGCTTATATAATAAAATAGGTAGCGCTTATATAATAAA
10389 TATGTTAATT
Statistics
Matches: 222, Mismatches: 12, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
235 59 0.27
236 2 0.01
237 132 0.59
238 29 0.13
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (239 bp):
TAGGTACCGCTTATATAATGAAATAGGTAGCGTCTATATAATAAAATAGGTTAAGTACTGGAAAC
ATTATCAAGCACAATAATATATTAGGTACCGCTTATAATGTAATAGGTAGCACTTATATAATAAA
ATAGGTTAATTACTGGAAACATTATCAAACACAATAACATATTAGGTAGCGCTTATAATGTAATA
GGTAACGCTTATATAATAAAATAGGTAGCGCTTATATAATAAAA
Found at i:10368 original size:23 final size:23
Alignment explanation
Indices: 10342--10388 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
10332 CTTATAATGT
10342 AATAGGTAACGCTTATATAATAA
1 AATAGGTAACGCTTATATAATAA
*
10365 AATAGGTAGCGCTTATATAATAA
1 AATAGGTAACGCTTATATAATAA
10388 A
1 A
10389 TATGTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.30
Consensus pattern (23 bp):
AATAGGTAACGCTTATATAATAA
Found at i:10447 original size:23 final size:23
Alignment explanation
Indices: 10421--10470 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
10411 ATCAAGCACA
* *
10421 ATAACATATTAGGTACCACTTAT
1 ATAACATAATAGGTAACACTTAT
**
10444 ATAATGTAATAGGTAACACTTAT
1 ATAACATAATAGGTAACACTTAT
10467 ATAA
1 ATAA
10471 TAAATAAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (23 bp):
ATAACATAATAGGTAACACTTAT
Found at i:10455 original size:86 final size:86
Alignment explanation
Indices: 10344--10543 Score: 310
Period size: 86 Copynumber: 2.3 Consensus size: 86
10334 TATAATGTAA
* * *
10344 TAGGTAACGCTTATATAATAAAATAGGTAGCGCTTATATAATAAATATGTTAATTACTGAAAACA
1 TAGGTAACGCTTATATAATAAAATAGGTAACACTTATATAATAAATAAGTTAATTACTGAAAACA
10409 TTATCAAGCACAATAACATAT
66 TTATCAAGCACAATAACATAT
* * ** * *
10430 TAGGTACCACTTATATAATGTAATAGGTAACACTTATATAATAAATAAGTTAATTACTGGAAATA
1 TAGGTAACGCTTATATAATAAAATAGGTAACACTTATATAATAAATAAGTTAATTACTGAAAACA
10495 TTATCAAGCACAATAACATAT
66 TTATCAAGCACAATAACATAT
*
10516 TAGGTAGCGCTTATATAATAAAATAGGT
1 TAGGTAACGCTTATATAATAAAATAGGT
10544 TAATTACTTA
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
86 101 1.00
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (86 bp):
TAGGTAACGCTTATATAATAAAATAGGTAACACTTATATAATAAATAAGTTAATTACTGAAAACA
TTATCAAGCACAATAACATAT
Found at i:10515 original size:193 final size:192
Alignment explanation
Indices: 10130--10543 Score: 643
Period size: 194 Copynumber: 2.1 Consensus size: 192
10120 TATAATAAAA
*
10130 TAGGTAGCGCTATATAATAAAATAGGTAGCGCTTATATAATAAATAGGTAGCGCTTATAATAAAA
1 TAGGTAGCGCT-TATAATAAAATAGGTAACGCTTATATAATAAATAGGTAGCGCTTATAATAAAA
* * *
10195 TAGGTTAATTACTGGAAACATTATCAAGCACAATAATATATTAGGTACCGCTTATATAATGTAAT
65 TAGGTTAATTACTGAAAACATTATCAAGCACAATAACATATTAGGTACCACTTATATAATGTAAT
* * * *
10260 AGGTAGCACTTATATAATAAAATAGGTTAATTATTGGAAACATTATCAAACATAATAACATAT
130 AGGTAACACTTATATAATAAAATAAGTTAATTACTGGAAACATTATCAAACACAATAACATAT
**
10323 TAGGTAGCGCTTATAATGTAATAGGTAACGCTTATATAATAAAATAGGTAGCGCTTAT-ATAATA
1 TAGGTAGCGCTTATAATAAAATAGGTAACGCTTATATAAT-AAATAGGTAGCGCTTATAAT-A-A
*
10387 AATATGTTAATTACTGAAAACATTATCAAGCACAATAACATATTAGGTACCACTTATATAATGTA
63 AATAGGTTAATTACTGAAAACATTATCAAGCACAATAACATATTAGGTACCACTTATATAATGTA
* *
10452 ATAGGTAACACTTATATAAT-AAATAAGTTAATTACTGGAAATATTATCAAGCACAATAACATAT
128 ATAGGTAACACTTATATAATAAAATAAGTTAATTACTGGAAACATTATCAAACACAATAACATAT
10516 TAGGTAGCGCTTATATAATAAAATAGGT
1 TAGGTAGCGC-T-TATAATAAAATAGGT
10544 TAATTACTTA
Statistics
Matches: 201, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
192 28 0.14
193 78 0.39
194 82 0.41
195 13 0.06
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (192 bp):
TAGGTAGCGCTTATAATAAAATAGGTAACGCTTATATAATAAATAGGTAGCGCTTATAATAAAAT
AGGTTAATTACTGAAAACATTATCAAGCACAATAACATATTAGGTACCACTTATATAATGTAATA
GGTAACACTTATATAATAAAATAAGTTAATTACTGGAAACATTATCAAACACAATAACATAT
Found at i:11087 original size:24 final size:23
Alignment explanation
Indices: 11060--11115 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 23
11050 TTACCAAAGA
11060 TAACAATAAAATAATATTATTTAT
1 TAACAATAAAATAATATTATTT-T
11084 TAACAA-AATAATAATATTATTTT
1 TAACAATAA-AATAATATTATTTT
11107 TAA-AATAAA
1 TAACAATAAA
11116 CATTGTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.10
23 8 0.27
24 19 0.63
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (23 bp):
TAACAATAAAATAATATTATTTT
Found at i:11522 original size:199 final size:196
Alignment explanation
Indices: 11115--11553 Score: 616
Period size: 199 Copynumber: 2.2 Consensus size: 196
11105 TTTAAAATAA
* *
11115 ACATTGTAAATTTATCTATTACATTATAATTATCGGTTTCGATGTTTTTGAGATCGATACAATTT
1 ACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATATTTTTGAGATCGATAC-ATTT
* *
11180 TAAATGTATCGACACTTTGTGTGTACACCTCGTGGGCATTCATTTTGGAAAAAAGTATCGACACA
65 TAAATGTATCGACACTTTATGTGTACACCTCGTGGGCATTCATTCTGGAAAAAAGTATCGACACA
*
11245 AACTTAAAATGTGTCGATACATTATGTAGACCTATTTTCTCATAAAAATGATATATTTATACCGA
130 AACTTAAAATGTGTCGATACATTATGTAGACCTATTCTCTCATAAAAATGATATATTTATACCGA
11310 GT
195 GT
* * *
11312 ACATTGTAAATTTACCTATTACATTGTAATTATCGATTTCGATATTTTTGGGATCGATAC-TTTT
1 ACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATATTTTTGAGATCGATACATTTT
* * *
11376 AATAATGTATCGACACTTTATGTGTGCACCTCGTTTGGCATTCATTCTGGACAAAATGTATCGAC
66 -A-AATGTATCGACACTTTATGTGTACACCTCG-TGGGCATTCATTCTGGA-AAAAAGTATCGAC
*** * * *
11441 AC-TTTTTAAATTTGTGTCGATACATTATGTTGACCTATTCTCTCAT-AAAATCGTTATATTTAT
127 ACAAACTTAAA-ATGTGTCGATACATTATGTAGACCTATTCTCTCATAAAAAT-GATATATTTAT
*
11504 ATCG-GTT
190 ACCGAG-T
11511 ACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT
1 ACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT
11554 GTAACATATG
Statistics
Matches: 215, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
195 4 0.02
196 1 0.00
197 83 0.39
198 26 0.12
199 101 0.47
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.41
Consensus pattern (196 bp):
ACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATATTTTTGAGATCGATACATTTT
AAATGTATCGACACTTTATGTGTACACCTCGTGGGCATTCATTCTGGAAAAAAGTATCGACACAA
ACTTAAAATGTGTCGATACATTATGTAGACCTATTCTCTCATAAAAATGATATATTTATACCGAG
T
Found at i:11682 original size:35 final size:40
Alignment explanation
Indices: 11616--11698 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 40
11606 ATTCTCTCAT
*
11616 TATAATATAATTAATGATATATTATTCTTATTATAAT-AAA
1 TATAATATAATT-ATGATATATAATTCTTATTATAATAAAA
*
11656 TATAATATAATT-T-ATA-ATAATT-TTATTTTAATAAAA
1 TATAATATAATTATGATATATAATTCTTATTATAATAAAA
11692 TATAATA
1 TATAATA
11699 ATCATAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
35 9 0.22
36 15 0.38
37 3 0.08
38 1 0.03
40 12 0.30
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (40 bp):
TATAATATAATTATGATATATAATTCTTATTATAATAAAA
Found at i:11708 original size:30 final size:31
Alignment explanation
Indices: 11654--11722 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
11644 TATTATAATA
* *
11654 AATATAATATAATTTATAATAATTTTATT-TT
1 AATAAAATATAATTAATAATAATTTT-TTATT
*
11685 AATAAAATATAA-TAATCATAATTTTTTATT
1 AATAAAATATAATTAATAATAATTTTTTATT
*
11715 TATAAAAT
1 AATAAAAT
11723 TTTAGATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 2 0.06
30 20 0.61
31 11 0.33
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (31 bp):
AATAAAATATAATTAATAATAATTTTTTATT
Found at i:11837 original size:24 final size:23
Alignment explanation
Indices: 11785--11838 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
11775 TATTCTAATA
11785 TTTTAA-AAATAATATTATTATT
1 TTTTAATAAATAATATTATTATT
11807 TTGTTAATAAATAATATT-TTATT
1 TT-TTAATAAATAATATTATTATT
11830 GTATTTAAT
1 -T-TTTAAT
11839 GTTTATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 2 0.07
23 9 0.32
24 16 0.57
25 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTAATAAATAATATTATTATT
Found at i:16609 original size:20 final size:20
Alignment explanation
Indices: 16586--16657 Score: 99
Period size: 20 Copynumber: 3.6 Consensus size: 20
16576 TGAGCAGTCC
*
16586 GGTCAGGTGGGTCCCAGTTG
1 GGTCAGGTGGGCCCCAGTTG
*
16606 GGTCGGGTGGGCCCCAGTTG
1 GGTCAGGTGGGCCCCAGTTG
* *
16626 GGTCAGGTGAGCCCCAGTCG
1 GGTCAGGTGGGCCCCAGTTG
*
16646 TGTCAGGTGGGC
1 GGTCAGGTGGGC
16658 TCCACATCCG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.10, C:0.24, G:0.46, T:0.21
Consensus pattern (20 bp):
GGTCAGGTGGGCCCCAGTTG
Found at i:20353 original size:9 final size:9
Alignment explanation
Indices: 20339--20371 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
20329 TTTTCTCTTA
20339 AAATTTTAT
1 AAATTTTAT
20348 AAATTTGTA-
1 AAATTT-TAT
20357 AAATTTTAT
1 AAATTTTAT
20366 AAATTT
1 AAATTT
20372 ATCTCCCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 18 0.82
10 2 0.09
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (9 bp):
AAATTTTAT
Found at i:20360 original size:18 final size:18
Alignment explanation
Indices: 20337--20371 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
20327 TTTTTTCTCT
20337 TAAAATTTTATAAATTTG
1 TAAAATTTTATAAATTTG
20355 TAAAATTTTATAAATTT
1 TAAAATTTTATAAATTT
20372 ATCTCCCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TAAAATTTTATAAATTTG
Found at i:20517 original size:29 final size:29
Alignment explanation
Indices: 20471--20537 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
20461 TAGTTTTAAC
* *
20471 GACATGTTTGTACTAATATTTTAAGTGAT
1 GACATGTTTCTACCAATATTTTAAGTGAT
*
20500 GACATGTTTCTACCAATATTTTAATTGAT
1 GACATGTTTCTACCAATATTTTAAGTGAT
20529 GACATGTTT
1 GACATGTTT
20538 GTAACTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (29 bp):
GACATGTTTCTACCAATATTTTAAGTGAT
Found at i:21058 original size:18 final size:18
Alignment explanation
Indices: 21035--21119 Score: 91
Period size: 18 Copynumber: 4.6 Consensus size: 18
21025 AAATTTAGTT
21035 TTTTTATATTAATTATAA
1 TTTTTATATTAATTATAA
*
21053 TTTTTATATTTTAAATT-TGA
1 TTTTTATA--TT-AATTATAA
*
21073 TTTTTATATTAATTCTAA
1 TTTTTATATTAATTATAA
*
21091 TTATTTATATTATTTATAA
1 TT-TTTATATTAATTATAA
*
21110 TTCTTATATT
1 TTTTTATATT
21120 TTAAATTTTA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
17 4 0.07
18 21 0.37
19 16 0.28
20 12 0.21
21 4 0.07
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTTTATATTAATTATAA
Found at i:21742 original size:23 final size:23
Alignment explanation
Indices: 21712--21761 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
21702 CAACAACCGA
*
21712 CAAGCATCAATGTACCAATTCAG
1 CAAGCATCAATGCACCAATTCAG
* *
21735 CAAGCATCATTGCATCAATTCAG
1 CAAGCATCAATGCACCAATTCAG
21758 CAAG
1 CAAG
21762 TATCCTGCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (23 bp):
CAAGCATCAATGCACCAATTCAG
Found at i:22147 original size:215 final size:215
Alignment explanation
Indices: 21776--22422 Score: 1115
Period size: 215 Copynumber: 3.0 Consensus size: 215
21766 CTGCAACAAT
* *
21776 AATTTAGTCCTTAAAATTATATTTGCATCTGAAATTGACCCATACTTATTACTTATTTCTATTTT
1 AATTTAGTCCTTCAAATTATATTTGCATCTGAAATTAACCCATACTTATTACTTATTTCTATTTT
*
21841 TTAATTGGCCCATAACTTTTTAAAT-GGTATAATTTAGTACTTTTTTGCATTAATTTAAACCTCA
66 TTAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTAC-TTTTTGTATTAATTTAAACCTCA
* *
21905 CAATTTAAAATTATTTTGATTTGATCCCTCATCAATGTGTGTTGCTTAATTTATTTAAATTTTTA
130 CAATTTAAAATTATTTCGATTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTA
21970 TTTGTAATTTCATATTTGTTC
195 TTTGTAATTTCATATTTGTTC
*
21991 AATTTAGTCCTTCAAATTATATTTGCATATGAAATTAACCCATACTTATTACTTATTTCTATTTT
1 AATTTAGTCCTTCAAATTATATTTGCATCTGAAATTAACCCATACTTATTACTTATTTCTATTTT
22056 TTAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTGTATTAATTTAAACCTCAC
66 TTAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTGTATTAATTTAAACCTCAC
22121 AATTTAAAATTATTTCGATTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTAT
131 AATTTAAAATTATTTCGATTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTAT
*
22186 TTGTAATTTCATATTTGATC
196 TTGTAATTTCATATTTGTTC
* * *
22206 AATCTAGTCCTCCAAATTATATTTGCATCTGAAATTAACCCATACTTATTACTTATTTATATTTT
1 AATTTAGTCCTTCAAATTATATTTGCATCTGAAATTAACCCATACTTATTACTTATTTCTATTTT
* * * *
22271 TTAATTGGTCCATGAC-TTTT---TGTGTATAATTTAGTACTTTTTGTATTAATTTCAACCTCAC
66 TTAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTGTATTAATTTAAACCTCAC
*
22332 AATTTAAAATTATTTCGATTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTAAT
131 AATTTAAAATTATTTCGATTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTAT
22397 TTGTAATTTCATATTTGTTC
196 TTGTAATTTCATATTTGTTC
22417 AATTTA
1 AATTTA
22423 ATTCTTAAAT
Statistics
Matches: 413, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
211 127 0.31
214 4 0.01
215 267 0.65
216 15 0.04
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.49
Consensus pattern (215 bp):
AATTTAGTCCTTCAAATTATATTTGCATCTGAAATTAACCCATACTTATTACTTATTTCTATTTT
TTAATTGGCCCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTGTATTAATTTAAACCTCAC
AATTTAAAATTATTTCGATTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTAT
TTGTAATTTCATATTTGTTC
Found at i:24767 original size:2 final size:2
Alignment explanation
Indices: 24760--24786 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24750 ACATACCCAC
24760 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24787 TGATAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25736 original size:12 final size:12
Alignment explanation
Indices: 25719--25765 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
25709 TTTTTAGTTT
25719 TAAAAAATAAAA
1 TAAAAAATAAAA
*
25731 TAAAAAATAAAC
1 TAAAAAATAAAA
*
25743 T-AGAAATGAAAA
1 TAAAAAAT-AAAA
25755 TAAGAAAATAA
1 TAA-AAAATAA
25766 CTTAATTGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
11 5 0.18
12 16 0.57
13 3 0.11
14 4 0.14
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.17
Consensus pattern (12 bp):
TAAAAAATAAAA
Found at i:26197 original size:29 final size:26
Alignment explanation
Indices: 26165--26217 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 26
26155 AATACTAAAT
26165 TTATTAAATTTATATTTAATAATATATTA
1 TTATTAAA-TT-TA-TTAATAATATATTA
*
26194 TTATTTAATTTATTAATAATATAT
1 TTATTAAATTTATTAATAATATAT
26218 AAAAATTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 12 0.52
27 2 0.09
28 2 0.09
29 7 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TTATTAAATTTATTAATAATATATTA
Found at i:27238 original size:34 final size:34
Alignment explanation
Indices: 27199--27308 Score: 105
Period size: 42 Copynumber: 3.0 Consensus size: 34
27189 AAATAACATC
27199 ATAACACTATTAAGTCTCAATAAGTCTAAAATAA
1 ATAACACTATTAAGTCTCAATAAGTCTAAAATAA
* *
27233 ATAACATCATAACACCATTAAATCTCAATAAGTTTAAAATAA
1 ATAACA-C-T------ATTAAGTCTCAATAAGTCTAAAATAA
* *
27275 ATAACACCAATAAGTCTCAATAAGTCT-AAATAA
1 ATAACACTATTAAGTCTCAATAAGTCTAAAATAA
27308 A
1 A
27309 ATCAACATCA
Statistics
Matches: 62, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
33 7 0.11
34 22 0.35
35 1 0.02
36 1 0.02
41 1 0.02
42 30 0.48
ACGTcount: A:0.52, C:0.16, G:0.05, T:0.27
Consensus pattern (34 bp):
ATAACACTATTAAGTCTCAATAAGTCTAAAATAA
Found at i:27244 original size:42 final size:42
Alignment explanation
Indices: 27188--27280 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
27178 GCTACACCTT
* *
27188 TAAATAACATCATAACACTATTAAGTCTCAATAAGTCTAAAA
1 TAAATAACATCATAACACCATTAAATCTCAATAAGTCTAAAA
*
27230 TAAATAACATCATAACACCATTAAATCTCAATAAGTTTAAAA
1 TAAATAACATCATAACACCATTAAATCTCAATAAGTCTAAAA
27272 TAAATAACA
1 TAAATAACA
27281 CCAATAAGTC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.53, C:0.16, G:0.03, T:0.28
Consensus pattern (42 bp):
TAAATAACATCATAACACCATTAAATCTCAATAAGTCTAAAA
Found at i:27330 original size:35 final size:34
Alignment explanation
Indices: 27241--27322 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
27231 AAATAACATC
* * *
27241 ATAACACCATTAAATCTCAATAAGTTTAAAATAA
1 ATAACACCAATAAGTCTCAATAAGTCTAAAATAA
27275 ATAACACCAATAAGTCTCAATAAGTCT-AAATAAA
1 ATAACACCAATAAGTCTCAATAAGTCTAAAAT-AA
*
27309 ATCAACATCAATAA
1 AT-AACACCAATAA
27323 TATTCAATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
33 4 0.10
34 28 0.67
35 10 0.24
ACGTcount: A:0.54, C:0.17, G:0.04, T:0.26
Consensus pattern (34 bp):
ATAACACCAATAAGTCTCAATAAGTCTAAAATAA
Found at i:27926 original size:11 final size:11
Alignment explanation
Indices: 27910--28038 Score: 116
Period size: 11 Copynumber: 12.5 Consensus size: 11
27900 TCGAGACTCG
*
27910 AGCTCGATTGA
1 AGCTCGATTCA
27921 AGCTCGATTCA
1 AGCTCGATTCA
27932 AGCTCGATTCA
1 AGCTCGATTCA
27943 AGCTCGATTCA
1 AGCTCGATTCA
27954 AGCTCG----A
1 AGCTCGATTCA
27961 A-CTCGATTCA
1 AGCTCGATTCA
27971 AGCTCG----A
1 AGCTCGATTCA
27978 A-CTCGATTCA
1 AGCTCGATTCA
**
27988 AGCTCGAATTTG
1 AGCTCG-ATTCA
*
28000 AGCTCGAATCA
1 AGCTCGATTCA
**
28011 AGCTCGATTTTG
1 AGCTCGA-TTCA
28023 AGCTCGATTCA
1 AGCTCGATTCA
28034 AGCTC
1 AGCTC
28039 AAACTCGATT
Statistics
Matches: 95, Mismatches: 11, Indels: 24
0.73 0.08 0.18
Matches are distributed among these distances:
6 8 0.08
7 4 0.04
10 4 0.04
11 62 0.65
12 17 0.18
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (11 bp):
AGCTCGATTCA
Found at i:27993 original size:28 final size:27
Alignment explanation
Indices: 27923--27994 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
27913 TCGATTGAAG
27923 CTCGATTCAAGCTCGATTCAAGCTCGA
1 CTCGATTCAAGCTCGATTCAAGCTCGA
* * *
27950 TTCAAGCTCGAA-CTCGATTCAAGCTCGAA
1 CTCGA-TTC-AAGCTCGATTCAAGCTCG-A
27979 CTCGATTCAAGCTCGA
1 CTCGATTCAAGCTCGA
27995 ATTTGAGCTC
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
27 5 0.14
28 24 0.69
29 6 0.17
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (27 bp):
CTCGATTCAAGCTCGATTCAAGCTCGA
Found at i:28005 original size:12 final size:12
Alignment explanation
Indices: 27988--28029 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
27978 ACTCGATTCA
27988 AGCTCGAATTTG
1 AGCTCGAATTTG
**
28000 AGCTCGAA-TCA
1 AGCTCGAATTTG
*
28011 AGCTCGATTTTG
1 AGCTCGAATTTG
28023 AGCTCGA
1 AGCTCGA
28030 TTCAAGCTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (12 bp):
AGCTCGAATTTG
Found at i:28005 original size:23 final size:20
Alignment explanation
Indices: 27910--28074 Score: 120
Period size: 17 Copynumber: 8.3 Consensus size: 20
27900 TCGAGACTCG
27910 AGCTCGATTGAAGCTCGATTCA
1 AGCTCGATT--AGCTCGATTCA
27932 AGCTCGATTCAAGCTCGATTCA
1 AGCTCGATT--AGCTCGATTCA
27954 AGCTCGA--A-CTCGATTCA
1 AGCTCGATTAGCTCGATTCA
27971 AGCTCGA--A-CTCGATTCA
1 AGCTCGATTAGCTCGATTCA
*
27988 AGCTCGAATTTGAGCTCGAATCA
1 AGCTCG-A-TT-AGCTCGATTCA
28011 AGCTCGATTTTGAGCTCGATTCA
1 AGCTCGA--TT-AGCTCGATTCA
*
28034 AGCTC-A--AACTCGATTCA
1 AGCTCGATTAGCTCGATTCA
* *
28051 AACTCGA--A-CTCAATTCA
1 AGCTCGATTAGCTCGATTCA
28068 AGCTCGA
1 AGCTCGA
28075 ACTCAAATTT
Statistics
Matches: 128, Mismatches: 7, Indels: 21
0.82 0.04 0.13
Matches are distributed among these distances:
17 60 0.47
18 4 0.03
22 31 0.24
23 33 0.26
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (20 bp):
AGCTCGATTAGCTCGATTCA
Found at i:28036 original size:80 final size:79
Alignment explanation
Indices: 27921--28075 Score: 247
Period size: 80 Copynumber: 1.9 Consensus size: 79
27911 GCTCGATTGA
* * * *
27921 AGCTCGATTCAAGCTCGATTCAAGCTCGATTCAAGCTCGAACTCGATTCAAGCTCGAACTCGATT
1 AGCTCGAATCAAGCTCGATTCAAGCTCGATTCAAGCTCAAACTCGATTCAAACTCGAACTCAATT
27986 CAAGCTCGAATTTG
66 CAAGCTCGAATTTG
**
28000 AGCTCGAATCAAGCTCGATTTTGAGCTCGATTCAAGCTCAAACTCGATTCAAACTCGAACTCAAT
1 AGCTCGAATCAAGCTCGA-TTCAAGCTCGATTCAAGCTCAAACTCGATTCAAACTCGAACTCAAT
28065 TCAAGCTCGAA
65 TCAAGCTCGAA
28076 CTCAAATTTG
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 17 0.25
80 52 0.75
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (79 bp):
AGCTCGAATCAAGCTCGATTCAAGCTCGATTCAAGCTCAAACTCGATTCAAACTCGAACTCAATT
CAAGCTCGAATTTG
Found at i:28080 original size:17 final size:17
Alignment explanation
Indices: 27945--28078 Score: 124
Period size: 17 Copynumber: 7.2 Consensus size: 17
27935 TCGATTCAAG
27945 CTCGATTCAAGCTCGAA
1 CTCGATTCAAGCTCGAA
27962 CTCGATTCAAGCTCGAA
1 CTCGATTCAAGCTCGAA
27979 CTCGATTCAAGCTCGAATTTGA
1 CTCGATTCAAGCTCG-A----A
*
28001 GCTCGAATCAAGCTCGATTTTGA
1 -CTCGATTCAAGCTCGA-----A
*
28024 GCTCGATTCAAGCTCAAA
1 -CTCGATTCAAGCTCGAA
*
28042 CTCGATTCAAACTCGAA
1 CTCGATTCAAGCTCGAA
*
28059 CTCAATTCAAGCTCGAA
1 CTCGATTCAAGCTCGAA
28076 CTC
1 CTC
28079 AAATTTGAAC
Statistics
Matches: 103, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
17 65 0.63
18 2 0.02
22 2 0.02
23 34 0.33
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (17 bp):
CTCGATTCAAGCTCGAA
Found at i:28796 original size:12 final size:12
Alignment explanation
Indices: 28779--28803 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
28769 TTATTTAAAG
28779 ATAAACAAACTC
1 ATAAACAAACTC
28791 ATAAACAAACTC
1 ATAAACAAACTC
28803 A
1 A
28804 CCAGAGGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.24, G:0.00, T:0.16
Consensus pattern (12 bp):
ATAAACAAACTC
Found at i:30066 original size:35 final size:33
Alignment explanation
Indices: 30027--30155 Score: 141
Period size: 35 Copynumber: 3.7 Consensus size: 33
30017 TTAATCATTA
30027 TTTAGGGTTTAGTATTTATAGTTTATAGTTTAGGG
1 TTTAGGGTTTA-TATTTATAGTTTAT-GTTTAGGG
* * * *
30062 TTTAGGGTTTTAGGATTTAAAGTTTGTGATTAGGG
1 TTTAGGG-TTTA-TATTTATAGTTTATGTTTAGGG
**
30097 TTTAGGGTTTATATTTAGGGTTTATGATTTAGGG
1 TTTAGGGTTTATATTTATAGTTTATG-TTTAGGG
*
30131 TTTAAGGTTTATATTTTATAGTTTA
1 TTTAGGGTTTATA-TTTATAGTTTA
30156 GGGTTTAGTG
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
33 11 0.14
34 22 0.28
35 30 0.38
36 16 0.20
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (33 bp):
TTTAGGGTTTATATTTATAGTTTATGTTTAGGG
Found at i:30071 original size:14 final size:14
Alignment explanation
Indices: 30054--30277 Score: 67
Period size: 14 Copynumber: 16.3 Consensus size: 14
30044 ATAGTTTATA
*
30054 GTTTAGGGTTTAGG
1 GTTTAGGGTTTAAG
* *
30068 GTTTTAGGATTTAAA
1 G-TTTAGGGTTTAAG
* * *
30083 GTTT-GTGATTAGG
1 GTTTAGGGTTTAAG
30096 GTTTAGGGTTTATA-
1 GTTTAGGGTTTA-AG
*
30110 -TTTAGGGTTTATG
1 GTTTAGGGTTTAAG
*
30123 ATTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
***
30137 GTTTATATTTTATA-
1 GTTTAGGGTTTA-AG
30151 GTTTAGGGTTT-AG
1 GTTTAGGGTTTAAG
*
30164 TGTTTTA-AGTTTACA-
1 -G-TTTAGGGTTTA-AG
30179 -TTTA-GGTTTAAG
1 GTTTAGGGTTTAAG
* *
30191 GTTCA-TGTTT-AG
1 GTTTAGGGTTTAAG
* *
30203 GCCTTAGGGTTTAGG
1 G-TTTAGGGTTTAAG
* ***
30218 GTCTAATATTTAAG
1 GTTTAGGGTTTAAG
*
30232 GCTTA-GGTTTAAG
1 GTTTAGGGTTTAAG
* *
30245 GTTTATGGTTTTATG
1 GTTTA-GGGTTTAAG
* *
30260 ATTTAGGGTTTATG
1 GTTTAGGGTTTAAG
30274 GTTT
1 GTTT
30278 TATAAAAATG
Statistics
Matches: 148, Mismatches: 44, Indels: 36
0.65 0.19 0.16
Matches are distributed among these distances:
11 1 0.01
12 13 0.09
13 38 0.26
14 67 0.45
15 28 0.19
16 1 0.01
ACGTcount: A:0.21, C:0.03, G:0.27, T:0.49
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:30113 original size:13 final size:14
Alignment explanation
Indices: 30097--30134 Score: 69
Period size: 13 Copynumber: 2.8 Consensus size: 14
30087 GTGATTAGGG
30097 TTTAGGGTTTAT-A
1 TTTAGGGTTTATGA
30110 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
30124 TTTAGGGTTTA
1 TTTAGGGTTTA
30135 AGGTTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:30148 original size:21 final size:21
Alignment explanation
Indices: 30114--30176 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
30104 TTTATATTTA
*
30114 GGGTTTATGATTTAGGGTTTA
1 GGGTTTATGATTTAGAGTTTA
* *
30135 AGGTTTAT-ATTTTATAGTTTA
1 GGGTTTATGA-TTTAGAGTTTA
*
30156 GGGTTTAGTGTTTTA-AGTTTA
1 GGGTTTA-TGATTTAGAGTTTA
30177 CATTTAGGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
20 1 0.03
21 28 0.82
22 5 0.15
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.52
Consensus pattern (21 bp):
GGGTTTATGATTTAGAGTTTA
Found at i:30161 original size:7 final size:7
Alignment explanation
Indices: 30054--30141 Score: 63
Period size: 7 Copynumber: 12.7 Consensus size: 7
30044 ATAGTTTATA
30054 GTTTAGG
1 GTTTAGG
30061 GTTTAGG
1 GTTTAGG
30068 GTTTTAGG
1 G-TTTAGG
* **
30076 ATTTAAA
1 GTTTAGG
*
30083 GTTT-GT
1 GTTTAGG
*
30089 GATTAGG
1 GTTTAGG
30096 GTTTAGG
1 GTTTAGG
*
30103 GTTTA-T
1 GTTTAGG
*
30109 ATTTAGG
1 GTTTAGG
*
30116 GTTTATG
1 GTTTAGG
*
30123 ATTTAGG
1 GTTTAGG
*
30130 GTTTAAG
1 GTTTAGG
30137 GTTTA
1 GTTTA
30142 TATTTTATAG
Statistics
Matches: 60, Mismatches: 18, Indels: 6
0.71 0.21 0.07
Matches are distributed among these distances:
6 7 0.12
7 47 0.78
8 6 0.10
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.48
Consensus pattern (7 bp):
GTTTAGG
Found at i:30214 original size:27 final size:26
Alignment explanation
Indices: 30180--30247 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
30170 AAGTTTACAT
* *
30180 TTAGGTTTAAGGTTCATGTTT-AGGCC
1 TTAGGTTTAAGGTTAATATTTAAGG-C
*
30206 TTAGGGTTTAGGGTCTAATATTTAAGGC
1 TTA-GGTTTAAGGT-TAATATTTAAGGC
30234 TTAGGTTTAAGGTT
1 TTAGGTTTAAGGTT
30248 TATGGTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
26 4 0.11
27 18 0.51
28 10 0.29
29 3 0.09
ACGTcount: A:0.22, C:0.07, G:0.28, T:0.43
Consensus pattern (26 bp):
TTAGGTTTAAGGTTAATATTTAAGGC
Found at i:30264 original size:22 final size:22
Alignment explanation
Indices: 30239--30280 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
30229 AAGGCTTAGG
30239 TTTAAGGTTTATGGTTTTATGA
1 TTTAAGGTTTATGGTTTTATGA
*
30261 TTTAGGGTTTATGGTTTTAT
1 TTTAAGGTTTATGGTTTTAT
30281 AAAAATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.24, T:0.57
Consensus pattern (22 bp):
TTTAAGGTTTATGGTTTTATGA
Found at i:31492 original size:14 final size:14
Alignment explanation
Indices: 31475--31515 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
31465 TTTATTCATA
31475 AATAATGTATTTTT
1 AATAATGTATTTTT
31489 AAT-A--TATTTTT
1 AATAATGTATTTTT
*
31500 AATAATGTAATTTT
1 AATAATGTATTTTT
31514 AA
1 AA
31516 AAAATCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 10 0.43
12 1 0.04
13 1 0.04
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (14 bp):
AATAATGTATTTTT
Found at i:32224 original size:76 final size:75
Alignment explanation
Indices: 32141--32346 Score: 233
Period size: 76 Copynumber: 2.7 Consensus size: 75
32131 TTATATATAT
* * **
32141 ATATATATACACTTATCATTCATCAATGATATATGTATATAAATATGATGTATGTACTTAAG-TA
1 ATATATATATACTTATCATTGATCAATGATATATGTATAT--ATATGATGTATGTACACAAGATA
*
32205 CGAATATAA-TTTT
64 --AATATAAGTTTA
* * * *
32218 A-ATATATATACCTATCATTGTTCATTGATATATGTATATGTATGATGTATGTACACAAGATTAA
1 ATATATATATACTTATCATTGATCAATGATATATGTATATATATGATGTATGTACACAAGA-TAA
32282 ATATAAGTTTA
65 ATATAAGTTTA
* *
32293 ATATATATATACTTATCATTGATCAATGATGTATG--TACATATGATGTATGTACA
1 ATATATATATACTTATCATTGATCAATGATATATGTATATATATGATGTATGTACA
32347 TATGATGTAT
Statistics
Matches: 110, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
74 41 0.37
75 4 0.04
76 64 0.58
77 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (75 bp):
ATATATATATACTTATCATTGATCAATGATATATGTATATATATGATGTATGTACACAAGATAAA
TATAAGTTTA
Found at i:32338 original size:15 final size:15
Alignment explanation
Indices: 32318--32359 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
32308 TCATTGATCA
32318 ATGATGTATGTACAT
1 ATGATGTATGTACAT
32333 ATGATGTATGTACAT
1 ATGATGTATGTACAT
32348 ATGATGTATGTA
1 ATGATGTATGTA
32360 TGTATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.40
Consensus pattern (15 bp):
ATGATGTATGTACAT
Found at i:32358 original size:19 final size:17
Alignment explanation
Indices: 32318--32369 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 17
32308 TCATTGATCA
32318 ATGATGTATGTAC--AT
1 ATGATGTATGTACATAT
32333 ATGATGTATGTACATAT
1 ATGATGTATGTACATAT
*
32350 GATGTATGTATGTATATAT
1 -ATG-ATGTATGTACATAT
32369 A
1 A
32370 AATATAAGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
15 13 0.41
17 2 0.06
18 4 0.12
19 13 0.41
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.42
Consensus pattern (17 bp):
ATGATGTATGTACATAT
Found at i:32369 original size:2 final size:2
Alignment explanation
Indices: 32362--32522 Score: 52
Period size: 2 Copynumber: 81.5 Consensus size: 2
32352 TGTATGTATG
* * *
32362 TA TA TA TA AA TA TA -A GTA TA TA TA TA -A TA CA TA TA -A GTA CA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA
* * * *
32403 TA TA TA TA AA GTA TA -A GTG TA TA TA TA TA AA AA CTA TA TA TA
1 TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA
* * * *
32445 TA -A T- TA TA TA TG TA TA -A TG TA TA CA TA -A GTA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* * * * *
32484 TGA TG TA TG TA AA CA -A AA TA TA TA TA TA TA TA TA TA TA T
1 T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32523 CATTAAACAT
Statistics
Matches: 116, Mismatches: 27, Indels: 32
0.66 0.15 0.18
Matches are distributed among these distances:
1 9 0.08
2 100 0.86
3 7 0.06
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (2 bp):
TA
Found at i:32397 original size:21 final size:20
Alignment explanation
Indices: 32357--32433 Score: 100
Period size: 21 Copynumber: 3.8 Consensus size: 20
32347 TATGATGTAT
*
32357 GTATGTATATATAAATATAA
1 GTATATATATATAAATATAA
*
32377 GTATATATATAATACATATAA
1 GTATATATAT-ATAAATATAA
*
32398 GTACATATATATAAAGTATAA
1 GTATATATATATAAA-TATAA
*
32419 GTGTATATATATAAA
1 GTATATATATATAAA
32434 AACTATATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
20 13 0.27
21 36 0.73
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.38
Consensus pattern (20 bp):
GTATATATATATAAATATAA
Found at i:32409 original size:23 final size:20
Alignment explanation
Indices: 32362--32480 Score: 85
Period size: 17 Copynumber: 6.2 Consensus size: 20
32352 TGTATGTATG
32362 TATATAT-A-AATATAAGTA
1 TATATATAATAATATAAGTA
32380 TATATATAATACATATAAGTACA
1 TATATATAATA-ATATAAGT--A
* *
32403 TATATATAA-AGTATAAGTG
1 TATATATAATAATATAAGTA
*
32422 TATATAT-ATAA-A-AACTA
1 TATATATAATAATATAAGTA
* *
32439 TATATATAATTATATATGTA
1 TATATATAATAATATAAGTA
* *
32459 TA-ATGT-AT-ACATAAGTA
1 TATATATAATAATATAAGTA
32476 TATAT
1 TATAT
32481 GTATGATGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
17 19 0.24
18 16 0.20
19 13 0.16
20 6 0.08
21 15 0.19
22 1 0.01
23 10 0.12
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.39
Consensus pattern (20 bp):
TATATATAATAATATAAGTA
Found at i:32467 original size:25 final size:25
Alignment explanation
Indices: 32439--32491 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
32429 ATAAAAACTA
* *
32439 TATATATAATTATATATGTATAATG
1 TATACATAAGTATATATGTATAATG
*
32464 TATACATAAGTATATATGTATGATG
1 TATACATAAGTATATATGTATAATG
32489 TAT
1 TAT
32492 GTAAACAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (25 bp):
TATACATAAGTATATATGTATAATG
Found at i:34995 original size:16 final size:16
Alignment explanation
Indices: 34976--35008 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
34966 TGAACTAATA
34976 TGATATTTACTTAACT
1 TGATATTTACTTAACT
*
34992 TGATATTTACTTGACT
1 TGATATTTACTTAACT
35008 T
1 T
35009 ATAAGTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.09, T:0.52
Consensus pattern (16 bp):
TGATATTTACTTAACT
Found at i:35303 original size:23 final size:24
Alignment explanation
Indices: 35273--35322 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
35263 TTTTTATGTA
35273 ATAATTAA-TTAATAA-TTT-AAAT
1 ATAATTAACTTAA-AATTTTAAAAT
35295 ATAATTTAACTTAAAATTTTAAAAT
1 ATAA-TTAACTTAAAATTTTAAAAT
35320 ATA
1 ATA
35323 TATAAAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.17
23 6 0.25
24 7 0.29
25 7 0.29
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
ATAATTAACTTAAAATTTTAAAAT
Found at i:35419 original size:20 final size:21
Alignment explanation
Indices: 35368--35420 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
35358 AAATTTTAAA
*
35368 AGAAAGATTGTTTTTTTGGAGC
1 AGAAA-ATTGATTTTTTGGAGC
* *
35390 A-CAAACTGATTTTTTGGAG-
1 AGAAAATTGATTTTTTGGAGC
35409 AGAAAATTGATT
1 AGAAAATTGATT
35421 AAAAGAAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 2 0.08
22 1 0.04
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (21 bp):
AGAAAATTGATTTTTTGGAGC
Found at i:39830 original size:64 final size:64
Alignment explanation
Indices: 39719--39947 Score: 186
Period size: 64 Copynumber: 3.5 Consensus size: 64
39709 TTAAATGGTT
* * *
39719 AATA-ATATT-TTTTAATTTAAAATATTCAAAAGATATAGA-TA-CATTTTACTATACAAACTTA
1 AATAGATATTATTTTAATTTGAGATATTCAAAAGATATA-ATTATCATTTTAATATACAAACTTA
* * *
39780 AATAGATATTATTTTAATTTGAGATATTAAGAAAGATATAATTATC-TTTTAATATTCAAAGTTA
1 AATAGATATTATTTTAATTTGAGATATTCA-AAAGATATAATTATCATTTTAATATACAAACTTA
* ** *
39844 AATAGATAATAAATACCTTTTAATTTGAGATATTCAAAAGA-ATAATTATCCTACTAATATTCAA
1 AATAGAT-AT---TA--TTTTAATTTGAGATATTCAAAAGATATAATTATCATTTTAATATACAA
39908 A-TTA
60 ACTTA
* *
39912 AAGAGATAAATATATTTGAATTTGTA-ATATTCAAAA
1 AATAGAT--AT-TATTTTAATTTG-AGATATTCAAAA
39948 AGAATATGAA
Statistics
Matches: 143, Mismatches: 11, Indels: 24
0.80 0.06 0.13
Matches are distributed among these distances:
61 4 0.03
62 5 0.03
63 17 0.12
64 33 0.23
65 22 0.15
66 1 0.01
67 3 0.02
68 20 0.14
69 20 0.14
70 18 0.13
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (64 bp):
AATAGATATTATTTTAATTTGAGATATTCAAAAGATATAATTATCATTTTAATATACAAACTTA
Found at i:39831 original size:35 final size:34
Alignment explanation
Indices: 39791--39893 Score: 104
Period size: 35 Copynumber: 3.0 Consensus size: 34
39781 ATAGATATTA
39791 TTTTAATTTGAGATATTAAGAAAGATATAATTATC
1 TTTTAATTTGAGATATTAA-AAAGATATAATTATC
* * * *
39826 TTTTAATATTCA-A-AGTTAAATAGATAATAAATACC
1 TTTTAAT-TTGAGATA-TTAAAAAGAT-ATAATTATC
*
39861 TTTTAATTTGAGATATTCAAAAGA-ATAATTATC
1 TTTTAATTTGAGATATTAAAAAGATATAATTATC
39894 CTACTAATAT
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
33 7 0.13
34 9 0.17
35 34 0.63
36 4 0.07
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.41
Consensus pattern (34 bp):
TTTTAATTTGAGATATTAAAAAGATATAATTATC
Found at i:39944 original size:65 final size:66
Alignment explanation
Indices: 39789--39953 Score: 192
Period size: 68 Copynumber: 2.4 Consensus size: 66
39779 AAATAGATAT
* ** *
39789 TATTTTAATTTGAGATATTAAGAAAGATATAATTATCTTTTAATATTCAAAGTTAAATAGATAAT
1 TATTTTAATTTGAGATATTCA-AAAGA-ATAATTATCTACTAATATTCAAAGTTAAAGAGATAAT
39854 AAA
64 AAA
39857 TACCTTTTAATTTGAGATATTCAAAAGAATAATTATCCTACTAATATTCAAA-TTAAAGAGATAA
1 TA--TTTTAATTTGAGATATTCAAAAGAATAATTAT-CTACTAATATTCAAAGTTAAAGAGATAA
*
39921 -ATA
63 TAAA
*
39924 TATTTGAATTTGTA-ATATTCAAAAAGAATA
1 TATTTTAATTTG-AGATATTC-AAAAGAATA
39954 TGAAGTTAAT
Statistics
Matches: 86, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
65 15 0.17
66 10 0.12
67 4 0.05
68 21 0.24
69 18 0.21
70 18 0.21
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (66 bp):
TATTTTAATTTGAGATATTCAAAAGAATAATTATCTACTAATATTCAAAGTTAAAGAGATAATAA
A
Found at i:41523 original size:13 final size:13
Alignment explanation
Indices: 41505--41557 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
41495 AAACAATTAA
**
41505 TCAAATCAGTTTC
1 TCAAATCAACTTC
41518 TCAAATCAACTTC
1 TCAAATCAACTTC
41531 TCAAATCAACTTC
1 TCAAATCAACTTC
*
41544 TCAAATCAGCTTC
1 TCAAATCAACTTC
41557 T
1 T
41558 ATACAATTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.34
Consensus pattern (13 bp):
TCAAATCAACTTC
Found at i:46440 original size:25 final size:25
Alignment explanation
Indices: 46412--46467 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
46402 ATTTTTCTAT
46412 TTATATTATAT-TATATTACTTATTC
1 TTATATTATATCTAT-TTACTTATTC
* * *
46437 TTATATTCTATCTATTTATTTATTT
1 TTATATTATATCTATTTACTTATTC
46462 TTATAT
1 TTATAT
46468 ATTTTCTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 24 0.89
26 3 0.11
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (25 bp):
TTATATTATATCTATTTACTTATTC
Found at i:52219 original size:36 final size:36
Alignment explanation
Indices: 52172--52242 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
52162 TACCTACTCA
*
52172 TACTTCAATGTTAGCGTTATTTTTGAACTCGGAGGT
1 TACTTCAATGTTAGCGTTATTTTTGAACTCAGAGGT
52208 TACTTCAATGTTAGCGTTATTTTTGAACTCAGAGG
1 TACTTCAATGTTAGCGTTATTTTTGAACTCAGAGG
52243 CACACCGAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (36 bp):
TACTTCAATGTTAGCGTTATTTTTGAACTCAGAGGT
Found at i:57128 original size:26 final size:26
Alignment explanation
Indices: 57097--57147 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
57087 CCCTAAATTG
*
57097 AAAAGAAGAAA-AAAGAGAAAAAGAAC
1 AAAAGAA-AAAGAAAAAGAAAAAGAAC
*
57123 AAAAGAAAAAGAAAAAGAAAGAGAA
1 AAAAGAAAAAGAAAAAGAAAAAGAA
57148 AAATAAGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (26 bp):
AAAAGAAAAAGAAAAAGAAAAAGAAC
Found at i:57132 original size:6 final size:6
Alignment explanation
Indices: 57097--57150 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
57087 CCCTAAATTG
* *
57097 AAAAGA AGAAA-A AAGAGA AAAAGAA CAAAAGA AAAAGA AAAAGA AAGAGA
1 AAAAGA A-AAAGA AAAAGA AAAAG-A -AAAAGA AAAAGA AAAAGA AAAAGA
57147 AAAA
1 AAAA
57151 TAAGGTGGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 2 0.05
6 28 0.70
7 5 0.12
8 5 0.12
ACGTcount: A:0.80, C:0.02, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:57132 original size:15 final size:14
Alignment explanation
Indices: 57096--57142 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 14
57086 GCCCTAAATT
57096 GAAAAGAAGAAAAAA
1 GAAAA-AAGAAAAAA
57111 GAGAAAAAGAACAAAA
1 GA-AAAAAGAA-AAAA
57127 G-AAAAAG-AAAAA
1 GAAAAAAGAAAAAA
57139 GAAA
1 GAAA
57143 GAGAAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 5 0.17
13 3 0.10
14 6 0.21
15 7 0.24
16 8 0.28
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (14 bp):
GAAAAAAGAAAAAA
Found at i:57767 original size:14 final size:14
Alignment explanation
Indices: 57748--57774 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
57738 GGTCTGAATT
57748 TCAAGATTCCAGAA
1 TCAAGATTCCAGAA
57762 TCAAGATTCCAGA
1 TCAAGATTCCAGA
57775 CAGGCAACCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (14 bp):
TCAAGATTCCAGAA
Found at i:58340 original size:106 final size:104
Alignment explanation
Indices: 58093--58635 Score: 667
Period size: 106 Copynumber: 5.3 Consensus size: 104
58083 ATACTTGGAA
* * **
58093 TTCAACTTCACAACGAAGGATATTGGTCCCAAGATAACACAAGCTCAACTTCACGATGAA-GGGC
1 TTCAACTTCACAACGAAGGATATTGGACCCAAGACAACACAAGCTCAACTTCACGGCGAAGGGGC
* * **
58157 GGCTGATTGTCAACAAACA-----ACTTTCAGAGTCAAT
66 GGCTGACTGTCAACAAACATTCCCAATTTCAGAACCAAT
* * * *
58191 TTCAACTTCATAACGAAGGATATTGGACTCAAGACAGCGCAAGCTCAACTTCACGGCGAAGGGGC
1 TTCAACTTCACAACGAAGGATATTGGACCCAAGACAACACAAGCTCAACTTCACGGCGAAGGGGC
58256 GGCTGACTGTCAACAAACAGTTCCCCAATTTCAGAACCAAT
66 GGCTGACTGTCAACAAACA-TT-CCCAATTTCAGAACCAAT
* * * **
58297 TTCAACTTCACAGCGAAGGATATTGGTCCCAAGATAACACAAGCTCAACTTCACGATGAAGGGGC
1 TTCAACTTCACAACGAAGGATATTGGACCCAAGACAACACAAGCTCAACTTCACGGCGAAGGGGC
* * * **
58362 GGTTGATTGTCAACAAACA-----ACTTTCAGAGTCAAT
66 GGCTGACTGTCAACAAACATTCCCAATTTCAGAACCAAT
*
58396 TTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGCTCAACTTCACGGCGAAGGGGC
1 TTCAACTTCACAACGAAGGATATTGGACCCAAGACAACACAAGCTCAACTTCACGGCGAAGGGGC
* *
58461 GGCTGACTGTCAACAAACATTTCCCCAATTTCATATCCAAT
66 GGCTGACTGTCAACAAACA-TT-CCCAATTTCAGAACCAAT
* * *
58502 TTCAACTTCACAGCGAAGGATATTGGACCCAAGACAGCACAAGCTCAACTTCACGGCAAAGGGGC
1 TTCAACTTCACAACGAAGGATATTGGACCCAAGACAACACAAGCTCAACTTCACGGCGAAGGGGC
* * *
58567 GGCTGACTGTCAACAAATAATTTCCCAGTTCCAGAACCAAT
66 GGCTGACTGTCAACAAA-CA-TTCCCAATTTCAGAACCAAT
*
58608 TTCAACTTCACGACGAAGGATATTGGAC
1 TTCAACTTCACAACGAAGGATATTGGAC
58636 TCGGAGCAAT
Statistics
Matches: 380, Mismatches: 49, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
98 52 0.14
99 110 0.29
106 214 0.56
107 4 0.01
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.21
Consensus pattern (104 bp):
TTCAACTTCACAACGAAGGATATTGGACCCAAGACAACACAAGCTCAACTTCACGGCGAAGGGGC
GGCTGACTGTCAACAAACATTCCCAATTTCAGAACCAAT
Found at i:58444 original size:205 final size:205
Alignment explanation
Indices: 58093--58637 Score: 842
Period size: 205 Copynumber: 2.6 Consensus size: 205
58083 ATACTTGGAA
*
58093 TTCAACTTCACAACGAAGGATATTGGTCCCAAGATAACACAAGCTCAACTTCACGATGAA-GGGC
1 TTCAACTTCACAGCGAAGGATATTGGTCCCAAGATAACACAAGCTCAACTTCACGATGAAGGGGC
*
58157 GGCTGATTGTCAACAAACAACTTTCAGAGTCAATTTCAACTTCATAACGAAGGATATTGGACTCA
66 GGCTGATTGTCAACAAACAACTTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCA
* *
58222 AGACAGCGCAAGCTCAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAGTTCCCCAATTT
131 AGACAACACAAGCTCAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAGTTCCCCAATTT
58287 CAGAACCAAT
196 CAGAACCAAT
58297 TTCAACTTCACAGCGAAGGATATTGGTCCCAAGATAACACAAGCTCAACTTCACGATGAAGGGGC
1 TTCAACTTCACAGCGAAGGATATTGGTCCCAAGATAACACAAGCTCAACTTCACGATGAAGGGGC
*
58362 GGTTGATTGTCAACAAACAACTTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCA
66 GGCTGATTGTCAACAAACAACTTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCA
*
58427 AGACAACACAAGCTCAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACATTTCCCCAATTT
131 AGACAACACAAGCTCAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAGTTCCCCAATTT
* *
58492 CATATCCAAT
196 CAGAACCAAT
* * * ***
58502 TTCAACTTCACAGCGAAGGATATTGGACCCAAGACAGCACAAGCTCAACTTCACGGCAAAGGGGC
1 TTCAACTTCACAGCGAAGGATATTGGTCCCAAGATAACACAAGCTCAACTTCACGATGAAGGGGC
* * * *
58567 GGCTGACTGTCAACAAATAA-TTTCCCAGTTCCAGAACCAATTTCAACTTCACGACGAAGGATAT
66 GGCTGATTGTCAACAAACAACTTT--CAG----AG--TCAATTTCAACTTCACAACGAAGGATAT
58631 TGGACTC
123 TGGACTC
58638 GGAGCAATAC
Statistics
Matches: 313, Mismatches: 19, Indels: 10
0.92 0.06 0.03
Matches are distributed among these distances:
204 62 0.20
205 213 0.68
206 3 0.01
210 2 0.01
212 33 0.11
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.21
Consensus pattern (205 bp):
TTCAACTTCACAGCGAAGGATATTGGTCCCAAGATAACACAAGCTCAACTTCACGATGAAGGGGC
GGCTGATTGTCAACAAACAACTTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCA
AGACAACACAAGCTCAACTTCACGGCGAAGGGGCGGCTGACTGTCAACAAACAGTTCCCCAATTT
CAGAACCAAT
Found at i:60776 original size:28 final size:27
Alignment explanation
Indices: 60732--60800 Score: 65
Period size: 28 Copynumber: 2.6 Consensus size: 27
60722 TACTATTTTG
* *
60732 ATTATTATTTTTCTATT-TATATATTAT
1 ATTATTATTCTTATATTCTATATATT-T
*
60759 ATTACTTATTCTTATATTCTATGTATTT
1 ATTA-TTATTCTTATATTCTATATATTT
60787 A-T-TTATT-TTATATT
1 ATTATTATTCTTATATT
60801 TTTCTTCTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
24 7 0.19
25 5 0.14
27 5 0.14
28 13 0.35
29 7 0.19
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (27 bp):
ATTATTATTCTTATATTCTATATATTT
Found at i:66151 original size:16 final size:15
Alignment explanation
Indices: 66120--66164 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
66110 TAGTTAATGT
*
66120 TACGTGAAACTGTTC
1 TACGTGAAAATGTTC
66135 TACGTGAAAAATGTTC
1 TACGTG-AAAATGTTC
*
66151 TACCTGAAAATGTT
1 TACGTGAAAATGTT
66165 ATATATAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (15 bp):
TACGTGAAAATGTTC
Found at i:67322 original size:2 final size:2
Alignment explanation
Indices: 67315--67348 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
67305 CTTATAACGG
67315 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67349 CAAAAATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67420 original size:23 final size:24
Alignment explanation
Indices: 67389--67451 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
67379 TAAATCAGAG
* *
67389 TCCATGTCAAGTATCATAT-AAAA
1 TCCAGGTCAAATATCATATCAAAA
* *
67412 TTCAGGTCAAATATCATATCAGAA
1 TCCAGGTCAAATATCATATCAAAA
*
67436 TCCAGGTCAAAAATCA
1 TCCAGGTCAAATATCA
67452 GATAAACTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 16 0.48
24 17 0.52
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (24 bp):
TCCAGGTCAAATATCATATCAAAA
Found at i:67457 original size:47 final size:46
Alignment explanation
Indices: 67364--67457 Score: 116
Period size: 47 Copynumber: 2.0 Consensus size: 46
67354 ATTAAAACAT
* * * ** *
67364 AATTCAGGTCAAGTATAAATCAGAGTCCATGTCAAGTATCATATAA
1 AATTCAGGTCAAATATAAATCAGAATCCAGGTCAAAAATCAGATAA
*
67410 AATTCAGGTCAAATATCATATCAGAATCCAGGTCAAAAATCAGATAA
1 AATTCAGGTCAAATAT-AAATCAGAATCCAGGTCAAAAATCAGATAA
67457 A
1 A
67458 CTATATATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 15 0.38
47 25 0.62
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.26
Consensus pattern (46 bp):
AATTCAGGTCAAATATAAATCAGAATCCAGGTCAAAAATCAGATAA
Found at i:68236 original size:30 final size:30
Alignment explanation
Indices: 68176--68275 Score: 141
Period size: 30 Copynumber: 3.4 Consensus size: 30
68166 CTTTTAAAAT
* * * *
68176 AATTACCAAAATAACA-CCTTTTCAAATTA
1 AATTCCCAAAATAGCACCCATTTCGAATTA
*
68205 AATTCCCAAAATAGTACCCATTTCGAATTA
1 AATTCCCAAAATAGCACCCATTTCGAATTA
68235 AATTCCCAAAATAGCACCCATTTCGAATT-
1 AATTCCCAAAATAGCACCCATTTCGAATTA
68264 AATTCCCAAAAT
1 AATTCCCAAAAT
68276 GTCACCCGAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 25 0.39
30 39 0.61
ACGTcount: A:0.43, C:0.24, G:0.04, T:0.29
Consensus pattern (30 bp):
AATTCCCAAAATAGCACCCATTTCGAATTA
Found at i:74643 original size:24 final size:24
Alignment explanation
Indices: 74605--74674 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
74595 TAAATCAGAG
* *
74605 TCCATGTCAAGTATCATATAAAAA
1 TCCAGGTCAAATATCATATAAAAA
* * *
74629 TTCAGGTCAAATATCATATCAGAA
1 TCCAGGTCAAATATCATATAAAAA
*
74653 TCCAGGTCAAAAATCATATAAA
1 TCCAGGTCAAATATCATATAAA
74675 CTATTTATAT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (24 bp):
TCCAGGTCAAATATCATATAAAAA
Found at i:75467 original size:29 final size:30
Alignment explanation
Indices: 75396--75460 Score: 107
Period size: 29 Copynumber: 2.2 Consensus size: 30
75386 AAAATAATGA
*
75396 CCAAAATAGCA-CCTTTTCGAATTAAATTC
1 CCAAAATAGCACCCATTTCGAATTAAATTC
75425 CCAAAATAGCACCCATTTCGAATT-AATTC
1 CCAAAATAGCACCCATTTCGAATTAAATTC
75454 CCAAAAT
1 CCAAAAT
75461 GTCACCCGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 23 0.68
30 11 0.32
ACGTcount: A:0.40, C:0.26, G:0.06, T:0.28
Consensus pattern (30 bp):
CCAAAATAGCACCCATTTCGAATTAAATTC
Found at i:76775 original size:10 final size:11
Alignment explanation
Indices: 76747--76776 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
76737 TTTATAGTTC
76747 TTTCCTTTTTA
1 TTTCCTTTTTA
76758 TTTCCTTTTTA
1 TTTCCTTTTTA
76769 TTT-CTTTT
1 TTTCCTTTT
76777 AGAAATTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.26
11 14 0.74
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTCCTTTTTA
Found at i:77021 original size:12 final size:12
Alignment explanation
Indices: 77004--77030 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76994 GAATCGGGTT
77004 TTTAAATTTTAA
1 TTTAAATTTTAA
77016 TTTAAATTTTAA
1 TTTAAATTTTAA
77028 TTT
1 TTT
77031 TTGCGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTAAATTTTAA
Found at i:78571 original size:14 final size:16
Alignment explanation
Indices: 78537--78568 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78527 CAAATACAAC
*
78537 ATTCCCATAATGTTAT
1 ATTCCAATAATGTTAT
78553 ATTCCAATAATGTTAT
1 ATTCCAATAATGTTAT
78569 TCCCAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (16 bp):
ATTCCAATAATGTTAT
Found at i:79463 original size:13 final size:13
Alignment explanation
Indices: 79447--79471 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79437 ACAGTTAATT
79447 AAATCAGTTTCTC
1 AAATCAGTTTCTC
79460 AAATCAGTTTCT
1 AAATCAGTTTCT
79472 ATACAATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (13 bp):
AAATCAGTTTCTC
Found at i:80821 original size:17 final size:18
Alignment explanation
Indices: 80801--80834 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80791 ATTTTATAAA
*
80801 TTTAT-AAATTATAATTT
1 TTTATCAAAATATAATTT
80818 TTTATCAAAATATAATT
1 TTTATCAAAATATAATT
80835 ATAGATTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTATCAAAATATAATTT
Found at i:84223 original size:44 final size:44
Alignment explanation
Indices: 84163--84350 Score: 245
Period size: 44 Copynumber: 4.3 Consensus size: 44
84153 ATATCATGAC
84163 CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGA
1 CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGA
* * *
84207 TGGTATAGATATTACTTTACATAGTAGTATCGATACTCCTTGGA
1 CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGA
** * *
84251 CAATATCGATACT-TTTTACATAGTAGTATCGATAGTCCTTGGA
1 CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGA
** ** *
84294 CAATATCGATACTACTACACATAGTAGTATCGATACTCATTGAGA
1 CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTG-GA
84339 -GGTATCGATACT
1 CGGTATCGATACT
84351 GTTGGGTTGC
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
43 41 0.33
44 82 0.66
45 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (44 bp):
CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGA
Found at i:84259 original size:20 final size:20
Alignment explanation
Indices: 84234--84306 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
84224 TACATAGTAG
84234 TATCGATACTCCTTGGACAA
1 TATCGATACTCCTTGGACAA
** ** *
84254 TATCGATACTTTTTACATAGTA
1 TATCGATACTCCTTGGACA--A
*
84276 GTATCGATAGTCCTTGGACAA
1 -TATCGATACTCCTTGGACAA
84297 TATCGATACT
1 TATCGATACT
84307 ACTACACATA
Statistics
Matches: 38, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
20 23 0.61
21 1 0.03
22 1 0.03
23 13 0.34
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (20 bp):
TATCGATACTCCTTGGACAA
Found at i:84345 original size:87 final size:88
Alignment explanation
Indices: 84163--84350 Score: 245
Period size: 87 Copynumber: 2.1 Consensus size: 88
84153 ATATCATGAC
*** * **
84163 CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGATGGTATAGATATTACTTTACA
1 CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGACAATATAGATACTACTACACA
*
84228 TAGTAGTATCGATACTCCTTGGA
66 TAGTAGTATCGATACTCATTGGA
** * * *
84251 CAATATCGATACT-TTTTACATAGTAGTATCGATAGTCCTTGGACAATATCGATACTACTACACA
1 CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGACAATATAGATACTACTACACA
84315 TAGTAGTATCGATACTCATTGAGA
66 TAGTAGTATCGATACTCATTG-GA
84339 -GGTATCGATACT
1 CGGTATCGATACT
84351 GTTGGGTTGC
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
87 72 0.85
88 13 0.15
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (88 bp):
CGGTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGACAATATAGATACTACTACACA
TAGTAGTATCGATACTCATTGGA
Done.