genome.fa.s1399.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001399.1 Hibiscus syriacus cultivar Beakdansim tig00002732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135155

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10327--10431	1	105.0	1	71	0	75	85	0	13	0	0.64
10327--10435	12	8.8	12	82	10	121	85	0	13	0	0.65
10321--10435	32	3.6	32	83	13	139	84	0	13	1	0.70
11372--11936	84	6.7	84	98	0	1058	27	15	23	34	1.94
12548--13185	113	5.6	113	95	0	1015	37	13	19	28	1.90
13480--13586	3	35.7	3	88	0	160	33	1	0	64	1.04
14057--14091	18	1.9	18	88	11	54	74	8	14	2	1.17
14997--15037	20	2.0	21	85	4	57	36	2	2	58	1.24
17965--18020	19	2.9	19	89	2	76	19	33	16	30	1.94
18007--18064	22	2.6	23	86	5	82	22	18	24	34	1.96
23616--23697	35	2.4	36	83	8	107	26	2	30	40	1.69
23632--23699	35	1.9	35	93	0	118	29	1	26	42	1.64
24281--24320	21	1.9	21	89	0	62	57	0	5	37	1.21
26564--26642	42	1.9	41	86	2	113	26	22	13	36	1.92
27796--27833	20	1.9	20	88	0	58	21	18	31	28	1.97
27860--27912	20	2.7	20	87	0	79	26	18	20	33	1.96
30195--30233	18	2.1	19	85	4	53	51	5	2	41	1.38
39269--39343	35	2.1	35	95	0	132	32	29	29	9	1.88
39403--39513	24	4.7	24	82	1	82	42	18	12	26	1.86
39420--39509	23	3.8	23	83	4	108	38	18	15	26	1.91
40642--40677	18	2.0	18	88	0	54	30	16	0	52	1.44
41869--41899	7	4.4	7	91	0	53	29	29	29	12	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41891--41920	13	2.3	13	100	0	60	13	23	46	16	1.82
42727--42797	32	2.2	32	87	5	99	38	28	12	21	1.90
51990--52021	13	2.5	13	100	0	64	40	6	15	37	1.73
54760--54863	31	3.4	31	89	0	145	21	17	30	30	1.96
63271--63320	26	1.9	26	84	8	66	60	0	6	34	1.21
63313--63364	19	2.7	19	79	8	52	69	0	3	26	1.06
67811--67856	16	2.9	16	76	0	56	41	23	15	19	1.89
68041--68170	32	4.1	32	84	7	108	35	23	13	27	1.92
69342--69551	76	2.8	77	88	2	291	24	32	23	20	1.98
71468--71507	21	1.9	21	90	10	64	52	0	10	37	1.35
75355--75394	21	1.9	21	89	0	62	25	40	25	10	1.86
77325--77372	17	2.9	17	80	17	57	14	0	27	58	1.37
77631--77689	29	2.0	29	100	0	118	38	0	37	23	1.55
77981--78192	75	2.8	75	83	2	255	26	30	22	20	1.98
80845--80878	2	17.0	2	100	0	68	50	0	0	50	1.00
80918--80987	24	2.9	24	76	0	68	45	18	11	24	1.82
80893--80987	48	2.0	47	83	2	118	45	17	13	23	1.84
81662--81704	18	2.4	18	96	0	77	16	23	44	16	1.86
87996--88079	24	3.6	24	75	3	64	44	19	14	22	1.86
87992--88085	47	2.0	47	81	4	109	45	17	13	23	1.84
88767--88808	18	2.3	18	100	0	84	9	23	50	16	1.75
88763--88790	13	2.2	13	100	0	56	14	25	42	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88785--88811	13	2.1	13	100	0	54	14	25	44	14	1.84
89398--89429	2	16.0	2	93	0	55	50	3	0	46	1.17
96742--96771	2	15.0	2	100	0	60	50	0	0	50	1.00
98756--98799	20	2.3	19	81	11	54	29	22	2	45	1.65
99376--99409	18	1.9	17	88	5	50	38	0	0	61	0.96
104132--104160	15	1.9	15	100	0	58	72	0	0	27	0.85
104486--104527	14	2.9	15	82	6	52	64	4	11	19	1.44
108713--108764	22	2.4	22	93	0	86	28	51	5	13	1.64
110505--110542	3	12.7	3	100	0	76	34	65	0	0	0.93
113952--114032	29	2.8	29	82	0	108	28	17	11	43	1.83
117685--117724	20	2.1	19	85	4	53	27	2	10	60	1.42
120221--120263	18	2.4	18	88	0	59	30	18	4	46	1.69
122416--122440	3	8.3	3	100	0	50	32	0	0	68	0.90
122827--122904	33	2.3	34	95	2	140	57	6	6	29	1.49
123157--123215	31	2.0	30	84	12	79	44	30	13	11	1.80
134583--134623	21	2.0	21	95	0	73	24	19	26	29	1.98

Tables:   1

The End!