genome.fa.s14.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000014.1 Hibiscus syriacus cultivar Beakdansim tig00000029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188288

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13327--13377	24	2.2	23	83	10	68	37	0	1	60	1.08
13930--14018	46	1.9	46	90	0	142	52	12	3	31	1.55
17413--17454	20	2.1	20	86	0	57	21	9	19	50	1.75
17425--17484	20	3.0	20	80	0	66	25	10	16	48	1.77
21207--21235	12	2.3	13	94	5	51	37	6	17	37	1.76
26453--26500	21	2.2	22	85	3	62	20	31	10	37	1.87
41916--41976	23	2.7	23	81	0	86	21	27	24	26	1.99
48141--48167	2	13.5	2	100	0	54	51	0	0	48	1.00
49506--49574	24	3.2	24	66	30	73	27	28	0	43	1.55
49497--49577	40	2.0	40	100	0	162	27	33	0	39	1.57
51861--51898	20	1.9	20	88	0	58	13	26	36	23	1.91
61054--61103	25	2.0	25	92	0	82	46	10	18	26	1.80
61616--61650	18	1.9	18	94	0	61	25	22	28	22	1.99
61633--61734	28	3.6	28	94	0	177	20	22	25	31	1.98
62101--62148	24	1.9	24	83	8	60	58	2	16	22	1.49
64363--64412	25	2.0	25	96	0	91	46	12	18	24	1.82
64490--64556	4	16.8	4	93	0	107	29	0	20	49	1.50
64981--65016	18	2.0	18	94	0	63	25	19	33	22	1.97
65297--65342	24	1.9	24	86	8	67	52	0	6	41	1.27
65297--65338	14	3.0	14	80	13	50	52	0	7	40	1.29
68471--68518	25	1.9	25	95	0	87	47	8	18	25	1.76
68596--68638	4	10.8	4	94	0	77	27	0	23	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69054--69089	18	2.0	18	94	0	63	25	22	30	22	1.99
75970--76035	19	3.5	19	72	12	55	75	1	3	19	1.01
77384--77478	34	2.8	33	86	9	122	27	14	1	56	1.45
77601--77677	34	2.3	35	84	10	106	25	14	2	57	1.50
77796--77914	41	2.9	41	87	1	159	36	23	14	26	1.93
77802--78014	20	10.6	20	73	10	148	35	22	13	28	1.92
77828--78014	101	1.9	101	82	8	238	34	22	13	28	1.92
77999--78050	18	2.9	18	88	0	77	26	15	11	46	1.80
78189--78226	16	2.3	17	86	4	51	26	2	2	68	1.16
78963--79009	24	2.0	24	95	0	85	27	21	17	34	1.95
81494--81547	20	2.7	20	76	0	63	35	16	18	29	1.93
83129--83184	21	2.7	20	75	8	58	19	19	37	23	1.94
83336--83377	4	10.5	4	84	0	57	69	2	2	26	1.13
83606--83646	21	2.0	21	95	0	73	34	29	14	21	1.93
85969--85999	11	2.8	11	90	0	53	16	0	3	80	0.83
90813--90897	34	2.5	34	78	16	104	27	12	3	56	1.53
90808--91223	201	2.1	200	89	1	654	28	19	12	39	1.88
91014--91099	34	2.6	32	83	10	109	27	15	2	54	1.53
91234--91269	18	2.1	17	94	5	63	25	0	2	72	0.98
91851--91888	15	2.5	15	91	4	58	15	7	0	76	1.01
94375--94528	75	2.0	77	91	5	249	33	11	16	39	1.83
97506--97545	22	1.9	20	90	10	62	42	10	5	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99943--100009	29	2.3	29	78	16	75	32	5	1	59	1.31
100078--100102	13	1.9	13	100	0	50	48	0	0	52	1.00
100053--100131	43	1.9	40	87	7	113	55	2	2	39	1.27
100091--100199	28	3.7	30	88	4	170	60	1	5	32	1.30
99373--101061	851	2.0	847	98	0	3292	42	9	8	39	1.68
100789--100855	29	2.3	29	78	16	75	32	5	1	59	1.31
100924--100948	13	1.9	13	100	0	50	48	0	0	52	1.00
100937--101044	28	3.7	29	86	7	157	61	1	5	31	1.30
100937--101059	28	4.6	25	68	23	72	60	1	5	31	1.29
103757--103794	20	1.9	20	94	0	67	21	10	10	57	1.61
104151--104222	29	2.6	29	80	8	78	59	0	0	40	0.97
106916--106945	11	2.7	11	94	0	51	16	13	10	60	1.59
115065--115183	40	3.0	40	81	6	123	30	17	13	38	1.88
115232--115346	40	2.8	42	75	7	119	27	20	20	30	1.98
116025--116063	21	1.9	20	89	5	60	28	0	2	69	1.02
127204--127231	8	3.5	8	100	0	56	39	0	10	50	1.37
131809--132541	55	13.6	55	78	9	559	30	17	25	26	1.97
131920--132178	104	2.5	102	76	14	242	32	20	25	21	1.98
131919--132224	51	5.8	51	77	10	244	32	19	24	23	1.98
132157--132541	163	2.4	164	84	3	508	30	15	26	28	1.96
139587--139665	31	2.5	31	87	0	113	21	10	15	53	1.71
140370--140405	7	5.1	7	86	0	54	44	2	25	27	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141258--141321	21	3.0	21	86	4	92	29	20	25	25	1.99
141554--141580	14	1.9	14	100	0	54	14	11	14	59	1.62
143572--143785	104	2.0	105	84	5	281	35	11	12	40	1.79
144522--144561	22	1.9	20	85	10	53	60	2	2	35	1.24
144829--144913	12	7.3	12	69	11	61	67	0	2	30	1.04
144829--144913	23	3.7	24	77	22	101	67	0	2	30	1.04
144824--144919	47	2.1	47	98	2	185	63	0	4	32	1.13
145235--145288	3	18.0	3	100	0	108	66	0	0	33	0.92
149897--150088	41	4.7	40	75	6	145	29	13	20	35	1.91
152794--153049	41	6.3	41	81	0	280	38	16	16	28	1.91
152794--153049	82	3.1	82	83	3	311	38	16	16	28	1.91
152794--153049	123	2.1	123	87	2	363	38	16	16	28	1.91
153705--153746	18	2.3	18	91	0	66	38	16	26	19	1.92
155979--156213	35	6.5	35	76	15	196	45	3	5	45	1.42
155987--156202	69	3.0	67	76	20	197	46	3	4	44	1.41
156094--156159	30	2.1	31	83	10	82	46	1	4	46	1.32
155986--156201	71	3.1	70	83	11	223	46	3	4	45	1.41
156128--156215	38	2.3	38	77	12	92	44	2	6	46	1.42
156210--156254	18	2.4	19	88	3	65	17	0	0	82	0.68
156210--156241	9	3.6	9	91	0	55	18	0	0	81	0.70
156216--156257	22	2.0	21	85	4	57	16	0	0	83	0.65
156210--156295	9	9.2	9	74	14	50	16	3	1	79	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156227--156276	20	2.6	19	81	6	55	20	2	2	76	0.99
160134--160170	2	19.0	2	94	5	67	51	0	0	48	1.00
160427--160892	6	79.7	6	90	8	748	49	16	0	33	1.51
161167--161403	6	39.5	6	94	3	379	46	16	2	33	1.62
161642--161688	17	2.9	17	79	17	55	25	2	0	72	0.96
161642--161686	22	2.0	22	86	4	63	26	2	0	71	0.98
161940--161969	13	2.3	13	100	0	60	40	0	0	60	0.97
163695--163733	21	1.9	20	84	5	51	25	15	20	38	1.92
164086--164133	24	2.0	24	100	0	96	25	16	16	41	1.89
168626--168787	64	2.5	65	76	8	161	32	21	20	25	1.98
169573--169790	103	2.1	103	93	0	382	25	14	23	36	1.93
169797--169874	23	3.3	23	76	1	75	26	20	20	32	1.97
172058--172281	119	1.9	119	87	5	328	50	2	6	41	1.42

Tables:   1

The End!