genome.fa.s140.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000140.1 Hibiscus syriacus cultivar Beakdansim tig00000255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127281

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5306--5412	44	2.4	44	73	6	117	32	19	12	35	1.89
5614--5659	24	2.0	23	86	4	65	56	4	4	34	1.39
11439--11487	22	2.2	23	96	3	91	30	28	30	10	1.90
16557--16641	29	2.9	30	81	10	95	32	4	1	61	1.24
16724--16770	18	2.5	18	89	6	67	42	0	0	57	0.98
16747--16877	29	4.3	29	74	14	111	51	0	4	43	1.22
16955--17030	29	2.6	30	85	6	102	69	2	2	25	1.14
17805--17893	30	2.9	30	83	6	117	33	21	19	25	1.97
17805--17892	31	2.9	31	87	1	124	34	20	19	26	1.96
18111--18140	15	2.0	15	93	0	51	26	26	3	43	1.70
18303--18349	2	23.5	2	100	0	94	48	0	0	51	1.00
18977--19046	34	2.1	32	89	5	104	21	31	15	31	1.95
19329--19370	21	2.0	21	95	0	75	26	28	21	23	1.99
19499--19557	20	3.0	20	85	7	77	16	28	33	20	1.95
21507--21553	3	16.0	3	88	4	69	0	29	2	68	1.02
22542--22611	34	2.1	32	89	5	104	21	31	15	31	1.95
22894--22935	21	2.0	21	95	0	75	26	28	21	23	1.99
23051--23113	33	1.9	33	90	0	99	25	26	25	22	2.00
23109--23156	21	2.3	21	89	3	71	12	33	31	22	1.91
23518--23588	30	2.4	30	73	4	72	30	18	0	50	1.47
26869--26899	16	1.9	16	100	0	62	58	22	12	6	1.58
26967--27021	16	3.4	16	94	0	101	56	21	12	9	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28051--28084	10	3.4	10	95	0	59	55	23	11	8	1.63
28067--28099	14	2.4	14	89	0	57	54	27	12	6	1.60
28851--28910	22	2.7	22	82	7	68	33	26	16	23	1.96
28890--28982	31	3.1	29	80	9	114	36	21	16	25	1.94
28890--28981	30	3.0	31	84	4	116	36	20	16	26	1.93
29199--29228	15	2.0	15	93	0	51	26	26	3	43	1.70
29738--29808	30	2.4	30	73	4	72	30	16	0	52	1.45
32438--32481	22	2.0	21	83	12	54	29	20	11	38	1.87
35728--35768	20	2.0	20	90	0	64	29	14	0	56	1.39
37320--37383	33	1.9	33	93	0	110	48	18	6	26	1.72
45428--45455	2	14.0	2	100	0	56	50	0	0	50	1.00
48660--48698	18	2.2	18	100	0	78	25	5	38	30	1.78
50796--50829	12	2.9	12	86	4	52	11	14	8	64	1.49
51121--51162	21	2.0	20	86	4	57	57	4	0	38	1.20
57723--58298	54	10.9	54	76	8	382	34	21	12	31	1.91
57725--58410	54	12.9	54	74	11	339	33	21	13	31	1.91
57706--58409	162	4.4	161	76	8	519	33	21	12	32	1.91
60877--60916	17	2.4	16	84	8	53	37	2	0	60	1.11
61276--61310	18	1.9	18	94	0	61	51	8	2	37	1.47
67346--67398	21	2.5	21	87	0	79	20	24	18	35	1.95
67388--67480	20	4.7	20	90	0	150	37	22	21	18	1.94
67678--67743	22	3.0	22	88	0	96	24	37	15	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68115--68182	20	3.4	20	85	0	73	19	16	22	42	1.89
68149--68192	20	2.2	20	87	0	61	13	13	18	54	1.71
70069--70119	20	2.5	20	96	0	93	39	25	17	17	1.92
70266--70358	20	4.7	20	89	0	132	19	20	22	37	1.94
70842--70946	21	5.0	20	68	12	68	21	36	19	22	1.95
70867--70949	42	2.0	42	83	4	105	22	37	19	20	1.94
72484--72568	33	2.5	33	88	1	107	45	17	23	12	1.83
72495--72568	33	2.2	33	92	2	121	45	18	22	12	1.83
72617--72685	20	3.5	20	90	4	104	18	23	24	33	1.97
72581--72704	34	3.5	33	74	18	106	16	24	23	36	1.94
73283--73317	3	11.7	3	93	0	61	2	34	0	62	1.10
74993--75100	31	3.4	32	81	7	132	31	17	18	32	1.94
74996--75120	31	4.0	30	78	11	117	32	18	18	31	1.95
77821--77867	24	2.0	24	95	0	85	34	17	21	27	1.95
77825--77876	24	2.2	24	85	0	68	36	19	19	25	1.95
78705--78771	20	3.3	20	95	0	116	22	19	26	31	1.98
78758--78850	20	4.7	20	91	0	150	20	20	20	38	1.93
78847--78892	21	2.2	21	92	0	74	39	17	26	17	1.91
79029--79075	15	3.3	15	80	16	55	48	0	0	51	1.00
79193--79278	30	2.9	28	71	20	70	44	6	2	46	1.43
80662--80693	16	2.0	16	100	0	64	25	18	18	37	1.94
80838--80901	3	20.0	3	87	3	65	39	3	0	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86178--86603	124	3.5	124	89	0	615	33	24	16	25	1.95
87175--87220	23	2.0	23	83	8	58	43	4	0	52	1.21
87913--87955	21	2.1	21	86	4	61	46	4	25	23	1.71
88320--88353	11	2.8	12	86	13	52	17	0	2	79	0.86
88507--88576	28	2.4	29	80	7	70	15	5	5	72	1.22
88650--88702	20	2.7	20	74	11	54	18	7	5	67	1.35
90556--90586	2	15.5	2	100	0	62	48	0	0	51	1.00
110199--110243	23	2.0	23	90	0	72	44	8	13	33	1.75
110165--110330	87	1.9	87	96	0	305	45	9	13	32	1.74
110199--110452	110	2.3	110	94	2	438	41	9	15	33	1.79
110279--110343	23	2.8	23	97	0	121	40	9	15	35	1.79
110389--110452	25	2.6	25	92	4	105	32	9	20	37	1.85
113971--114209	120	2.0	120	93	1	408	38	14	13	32	1.86
113802--114392	303	2.0	303	95	0	1076	35	16	14	34	1.89
114091--114675	183	3.2	183	93	1	967	34	16	14	35	1.88
115885--115935	3	17.0	3	83	0	66	25	33	3	37	1.74
115889--115952	12	5.3	12	90	0	83	21	32	6	39	1.79
115889--115952	6	10.7	6	86	0	65	21	32	6	39	1.79
117398--118147	200	3.8	200	92	2	1206	30	18	15	36	1.91
120192--120257	33	2.0	33	90	0	105	22	48	0	28	1.51
120302--120354	21	2.5	21	90	0	88	15	32	7	45	1.74
122552--122599	22	2.3	19	76	16	51	18	16	10	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122520--122988	178	2.6	180	88	4	671	27	17	13	42	1.86
123796--123854	27	2.3	25	82	5	64	67	0	1	30	1.00
123810--123862	4	12.5	4	78	9	52	69	0	1	28	0.99
124211--124295	33	2.6	33	87	7	120	28	12	17	41	1.87
124344--124400	3	18.3	3	82	13	55	68	0	0	31	0.90
124345--124400	13	4.5	12	77	22	53	67	0	0	32	0.91
124345--124396	15	3.5	15	80	17	63	67	0	0	32	0.91
125812--125858	18	2.6	19	83	10	62	63	0	4	31	1.13

Tables:   1

The End!