genome.fa.s1401.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001401.1 Hibiscus syriacus cultivar Beakdansim tig00002737_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154828

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10516--10569	19	2.8	19	85	0	63	38	33	11	16	1.84
10741--10800	23	2.6	24	76	7	61	35	1	3	60	1.23
11006--11036	14	2.2	14	94	0	53	32	0	6	61	1.21
11788--11831	20	2.1	21	87	4	63	31	27	25	15	1.96
12407--12441	18	1.9	18	88	11	54	54	5	17	22	1.64
12497--12540	22	2.0	22	86	4	63	45	0	22	31	1.53
13257--13558	149	2.0	147	94	1	532	28	17	19	34	1.95
13257--13569	147	2.1	148	92	1	511	27	17	20	33	1.96
13537--13581	23	2.0	23	81	0	54	22	24	26	26	2.00
16083--16138	9	6.6	9	78	12	55	37	3	50	8	1.51
17986--18125	20	7.0	20	65	18	58	33	22	15	29	1.94
21689--21746	20	2.9	20	86	0	80	43	27	15	13	1.85
21757--21815	20	3.0	20	79	0	73	23	18	20	37	1.94
21789--21869	34	2.4	34	95	0	153	19	18	22	39	1.92
21935--21986	25	2.1	25	92	0	86	28	5	21	44	1.75
22363--22399	18	2.1	18	89	0	56	32	5	10	51	1.60
22355--22407	24	2.2	24	86	0	70	35	3	13	47	1.61
22709--22794	39	2.2	39	89	2	129	47	17	15	19	1.82
23125--23184	14	4.4	14	82	2	50	53	18	0	28	1.45
23122--23175	28	1.9	28	88	0	81	50	18	0	31	1.48
24595--24693	21	4.7	21	74	10	87	21	20	35	23	1.96
24595--24693	42	2.4	42	78	10	112	21	20	35	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25093--25142	21	2.4	21	86	0	73	34	30	16	20	1.94
27139--27189	22	2.3	22	96	0	93	21	13	43	21	1.87
27317--27365	20	2.5	20	93	0	89	18	18	22	40	1.91
27317--27376	20	3.0	20	83	13	79	16	18	25	40	1.91
27317--27397	40	2.0	40	81	13	96	19	18	23	38	1.93
35781--35819	19	2.0	19	85	5	51	33	5	12	48	1.63
36633--36715	30	2.8	30	92	1	141	18	8	18	55	1.66
37211--37269	28	2.1	28	80	0	64	59	3	0	37	1.14
37230--37281	15	3.2	16	75	17	54	59	1	0	38	1.08
38089--38130	22	1.9	22	90	9	68	16	21	4	57	1.58
45206--45340	45	3.0	45	95	0	234	19	17	20	43	1.88
48144--48181	17	2.2	17	86	9	51	13	26	34	26	1.93
50560--50670	51	2.2	51	83	6	145	17	27	33	22	1.96
50818--50851	10	3.4	10	83	0	50	35	32	0	32	1.58
50818--50859	20	2.1	20	86	0	57	40	28	0	30	1.57
50875--50937	26	2.4	26	100	0	126	41	0	9	49	1.35
50933--50971	20	2.0	20	94	0	69	28	0	2	69	1.02
50937--50992	29	2.0	29	96	3	105	26	0	3	69	1.04
50935--51004	20	3.5	20	76	16	63	24	0	2	72	0.98
50931--51000	29	2.4	28	85	4	104	24	0	2	72	0.98
52967--53006	6	6.7	6	88	0	53	35	17	32	15	1.91
52967--53027	9	6.4	9	78	10	50	32	11	34	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52967--53008	15	2.8	15	85	0	57	33	16	33	16	1.92
52981--53033	6	8.8	6	89	0	61	33	5	33	26	1.80
52981--53033	9	5.9	9	81	0	61	33	5	33	26	1.80
52975--53024	12	4.2	12	84	0	64	32	10	36	22	1.87
58866--58947	25	3.0	27	71	20	80	40	3	7	48	1.48
60985--61069	33	2.6	33	88	3	118	25	27	38	8	1.84
61073--61128	29	1.9	29	96	0	103	19	30	37	12	1.89
61208--61263	29	1.9	29	92	0	94	23	28	32	16	1.96
63659--63806	72	2.1	72	97	0	278	27	15	22	35	1.94
65480--65536	3	18.0	3	78	10	60	33	3	1	61	1.23
67927--67973	18	2.6	18	74	16	51	27	2	0	70	0.99
67936--67978	9	4.9	9	81	13	54	30	2	0	67	1.03
70150--70232	43	1.9	44	87	2	123	28	10	21	38	1.87
72784--72808	13	1.9	13	100	0	50	84	0	16	0	0.63
74998--75311	115	2.7	114	92	0	502	31	14	21	33	1.93
77459--77570	54	2.1	54	84	0	143	40	15	21	23	1.91
78770--81033	76	29.6	76	74	11	1418	26	18	19	35	1.95
78770--82190	152	22.2	152	74	12	2170	26	18	19	35	1.95
78846--80862	767	2.6	767	98	0	3854	26	18	18	35	1.94
80967--81068	45	2.3	45	94	0	177	22	20	20	36	1.95
81205--81275	3	23.0	3	77	5	61	43	0	0	56	0.99
81199--81282	18	4.5	18	85	10	107	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81320--82190	76	11.5	76	94	0	1494	22	20	21	34	1.97
82319--82375	3	18.0	3	78	10	60	33	3	1	61	1.23
85491--85546	29	1.9	29	82	7	69	33	5	8	51	1.56
93475--93508	16	2.1	16	94	0	59	32	26	8	32	1.87
97236--97276	21	2.0	21	90	4	57	39	7	9	43	1.65
101960--101995	14	2.6	13	87	12	54	36	2	0	61	1.11
105263--105302	21	1.9	21	89	0	62	12	7	15	65	1.47
114098--114172	38	2.0	37	87	5	107	48	2	1	48	1.24
115693--115726	15	2.3	15	90	10	52	52	0	0	47	1.00
117482--117724	101	2.6	93	75	15	237	53	10	3	32	1.51
117537--117731	101	1.9	100	82	6	241	53	11	3	31	1.52
119706--119746	20	2.0	21	85	4	57	21	0	7	70	1.11
123743--123856	38	3.0	38	89	0	165	38	21	11	28	1.88
124042--124131	45	2.0	45	86	0	126	38	25	10	25	1.87
124145--124192	25	1.9	25	100	0	96	37	6	2	54	1.38
124392--124804	203	2.0	203	89	3	625	37	12	8	40	1.75
130215--130268	26	2.0	27	96	3	101	14	18	3	62	1.46
142261--142316	29	2.0	28	82	3	67	33	0	3	62	1.12
144575--144788	103	2.1	101	92	6	353	53	6	8	31	1.55
145107--145159	21	2.5	21	84	0	70	20	26	18	33	1.96
145149--145321	20	8.3	20	83	8	211	36	20	20	21	1.95
145194--145321	60	2.1	60	97	0	238	37	20	19	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145194--145321	40	3.2	40	98	0	247	37	20	19	22	1.94
145682--145706	12	2.1	12	100	0	50	32	24	8	36	1.84
146196--146249	24	2.2	24	93	0	90	20	18	20	40	1.91
148538--148586	23	2.1	24	96	3	91	22	12	8	57	1.61
152479--152558	21	3.8	21	74	11	65	23	36	25	15	1.93
154450--154483	17	2.0	17	94	0	59	17	0	26	55	1.42

Tables:   1

The End!