Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001402.1 Hibiscus syriacus cultivar Beakdansim tig00002738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50696

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
622--676
20
2.8
20
85
0
74
49
21
16
12
1.79
659--698
20
2.0
21
95
5
73
32
25
20
22
1.98
664--734
32
2.2
32
87
7
99
38
26
21
14
1.91
1053--1118
22
3.0
22
90
0
105
21
15
39
24
1.91
1226--1340
60
1.9
62
94
5
209
37
8
18
35
1.82
1372--1562
20
9.6
20
91
2
314
20
18
19
40
1.91
1372--1562
59
3.2
60
91
2
314
20
18
19
40
1.91
1372--1562
79
2.4
80
91
2
314
20
18
19
40
1.91
1552--1603
20
2.5
20
87
3
68
36
17
23
23
1.95
4221--4270
7
7.1
7
100
0
100
44
14
28
14
1.83
18274--18525
126
2.0
126
100
0
504
28
11
16
42
1.84
21501--21538
13
3.0
13
84
7
51
71
0
15
13
1.16
21602--21658
17
3.6
16
70
29
50
75
1
3
19
1.04
21608--21654
21
2.2
21
85
7
60
76
2
4
17
1.04
22670--22739
3
23.7
3
74
8
54
71
1
1
25
1.03
22673--22758
18
4.3
19
75
12
75
69
1
1
27
1.03
22739--22844
38
2.8
37
84
8
133
48
4
2
44
1.38
22920--22998
39
2.0
38
85
4
104
46
6
3
43
1.47
22889--22983
48
2.0
47
89
6
145
44
7
3
45
1.47
22894--23013
50
2.4
49
83
9
138
46
5
2
45
1.40
22985--23031
2
23.5
2
91
0
76
44
0
4
51
1.21
23077--23317
4
60.5
4
84
0
214
18
45
6
29
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23434--23459
2
13.0
2
100
0
52
50
0
0
50
1.00
24279--24329
16
3.3
15
82
17
52
1
9
9
78
1.04
24280--24355
35
2.1
37
85
9
104
2
13
7
76
1.11
39578--39714
60
2.3
60
82
5
152
31
18
17
32
1.95

Tables:   1

The End!