genome.fa.s1404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001404.1 Hibiscus syriacus cultivar Beakdansim tig00002740_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81551

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855--888	17	2.0	17	88	0	50	41	5	5	47	1.52
888--942	29	1.9	28	85	10	76	34	21	20	23	1.97
1436--1471	18	1.9	19	94	5	65	22	16	44	16	1.86
1884--1945	28	2.2	28	97	0	115	50	17	4	27	1.67
6166--6216	26	2.0	26	84	0	66	62	5	3	27	1.36
6167--6222	26	2.2	26	80	6	60	62	5	5	26	1.39
7033--7132	12	8.5	12	88	8	88	46	3	1	50	1.23
7055--7123	2	34.5	2	100	0	138	49	0	0	50	1.00
9088--9133	17	2.6	18	89	6	76	21	8	28	41	1.83
11052--11223	39	4.4	39	81	1	200	23	16	26	32	1.96
11055--11220	79	2.1	79	85	1	226	23	16	27	32	1.96
15077--15148	17	4.2	17	77	7	65	43	8	12	36	1.73
17532--17606	17	4.4	16	73	9	51	40	9	13	37	1.77
17669--17754	37	2.3	37	97	0	163	45	17	10	26	1.81
17686--17747	20	3.2	20	64	13	58	50	17	4	27	1.67
20387--20459	31	2.4	31	88	4	103	24	26	30	19	1.98
22763--22801	19	2.1	19	85	0	51	17	28	28	25	1.98
24253--24396	33	4.6	30	71	12	103	54	18	2	24	1.57
35208--35260	24	2.2	24	93	3	90	49	0	5	45	1.26
35196--35260	26	2.5	25	83	16	80	47	1	6	44	1.37
35170--35359	64	3.0	62	84	7	235	46	3	7	43	1.47
35224--35294	38	1.9	37	88	5	108	46	1	8	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35298--35402	39	2.8	37	92	5	183	42	3	7	45	1.50
35440--35485	22	2.1	22	88	8	67	17	4	0	78	0.91
37743--37831	33	2.7	32	70	14	74	47	1	1	50	1.15
37796--37834	15	2.5	15	91	4	60	48	0	0	51	1.00
37770--37838	23	3.0	23	77	14	70	46	1	0	52	1.09
37722--37820	45	2.2	45	82	10	114	50	1	2	46	1.19
48815--48848	17	2.0	17	88	0	50	41	5	5	47	1.52
48848--48902	29	1.9	28	85	10	76	34	21	20	23	1.97
49397--49431	18	1.9	18	100	0	70	22	17	42	17	1.88
49844--49903	28	2.1	28	93	0	102	51	18	5	25	1.66
52622--52655	17	2.0	17	88	0	50	41	5	5	47	1.52
52655--52709	29	1.9	28	85	10	76	34	21	20	23	1.97
53204--53238	18	1.9	18	100	0	70	22	17	42	17	1.88
53652--53711	28	2.1	28	93	0	102	51	18	5	25	1.66
57950--58000	26	2.0	26	84	0	66	62	5	3	27	1.36
57951--58006	26	2.2	26	80	6	60	62	5	5	26	1.39
58847--58892	2	23.5	2	95	4	85	50	0	0	50	1.00
60861--60906	17	2.6	18	89	6	76	21	8	28	41	1.83
62820--62991	39	4.4	39	82	1	191	23	16	26	32	1.96
62823--62975	79	1.9	79	87	0	225	22	15	28	33	1.94
66854--66925	17	4.2	17	77	7	65	43	8	12	36	1.73
69306--69380	17	4.4	16	73	9	51	40	9	13	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69443--69528	37	2.3	37	97	0	163	45	17	10	26	1.81
69460--69521	20	3.2	20	64	13	58	50	17	4	27	1.67
72161--72233	31	2.4	31	88	4	103	24	26	30	19	1.98
76035--76178	33	4.6	30	71	12	103	54	18	2	24	1.57

Tables:   1

The End!