genome.fa.s1405.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001405.1 Hibiscus syriacus cultivar Beakdansim tig00002742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116388

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15837--16139	156	2.0	152	89	3	464	28	16	6	48	1.72
17183--17221	15	2.6	15	91	0	60	25	5	15	53	1.62
18397--18459	29	2.1	30	94	2	110	30	33	0	36	1.58
20119--20181	28	2.3	27	78	10	74	36	14	15	33	1.88
26129--26180	28	2.0	25	81	11	59	53	0	3	42	1.19
26243--26286	22	2.0	22	86	13	63	56	0	0	43	0.99
26676--26739	29	2.2	29	81	10	69	59	4	3	32	1.34
27805--27850	3	15.0	3	86	4	56	58	0	0	41	0.98
28000--28285	120	2.4	119	82	10	323	24	17	15	42	1.88
28208--28725	113	4.6	113	85	3	622	28	18	14	38	1.91
28815--28880	19	3.6	19	73	22	77	18	22	10	48	1.78
28834--28890	17	3.2	17	69	26	55	19	22	8	49	1.76
28795--28890	36	2.5	39	90	6	144	18	21	10	48	1.78
28973--29035	19	3.4	19	70	16	69	15	25	11	47	1.79
28992--29048	17	3.2	17	69	26	55	19	22	8	49	1.76
28954--29048	36	2.6	36	91	5	145	17	23	10	48	1.78
28668--29062	158	2.5	159	95	2	693	23	18	15	42	1.88
28992--29424	112	3.8	112	84	5	518	29	18	14	38	1.89
30104--30333	115	2.0	114	93	0	397	29	21	15	33	1.94
31330--31436	1	107.0	1	71	0	79	0	13	0	85	0.63
31329--31439	7	15.4	7	83	14	138	0	14	0	84	0.67
38743--38774	15	2.1	15	94	0	55	46	6	18	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42710--42754	22	2.0	22	86	8	63	57	0	0	42	0.98
44275--44340	3	22.0	3	84	6	80	59	0	0	40	0.98
49340--49470	60	2.2	60	78	6	142	32	22	3	41	1.72
51275--51338	2	32.5	2	96	3	121	50	0	0	50	1.00
51493--51938	20	22.2	20	78	15	435	41	23	19	15	1.90
52031--52069	6	6.5	6	100	0	78	33	51	15	0	1.44
52568--52648	6	13.5	6	100	0	162	0	16	50	33	1.45
52744--52818	20	3.8	20	89	7	107	16	20	25	38	1.92
52866--52916	19	2.6	19	90	3	75	13	17	21	47	1.82
52823--52916	20	4.8	19	80	12	102	12	19	20	47	1.81
53094--53145	27	1.9	27	92	0	86	46	3	11	38	1.59
65561--65623	3	21.3	3	75	15	60	57	0	0	42	0.99
65796--66835	75	13.9	76	95	1	1736	35	21	19	22	1.96
65796--66835	453	2.3	452	94	2	1841	35	21	19	22	1.96
66710--66842	65	2.0	65	98	0	257	37	18	22	21	1.94
67880--67986	54	1.9	55	90	3	171	20	25	17	36	1.94
70055--70303	113	2.2	113	89	3	383	31	21	14	32	1.93
70304--70622	93	3.4	93	96	0	575	36	22	13	27	1.91
72730--72763	15	2.2	16	89	5	52	0	20	0	79	0.73
79577--79645	3	23.3	3	77	14	72	57	0	0	42	0.98
79577--79631	22	2.5	24	77	20	73	60	0	0	40	0.97
79577--79645	21	3.3	22	88	9	101	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87354--87399	20	2.2	20	85	11	58	30	10	28	30	1.91
87454--87506	18	2.7	19	78	18	63	30	13	33	22	1.92
88284--88378	23	4.1	23	76	8	102	22	22	24	31	1.98
94349--94398	21	2.4	21	100	0	100	22	40	26	12	1.88
94696--94737	17	2.4	18	80	4	50	35	0	2	61	1.09
97835--97889	28	2.0	28	82	7	67	40	5	10	43	1.63
98138--98164	13	2.1	13	100	0	54	48	0	0	51	1.00
99731--99872	76	1.9	76	86	2	205	24	16	14	44	1.85
99781--99936	85	1.8	85	85	0	222	24	18	12	44	1.85
102254--102316	27	2.3	27	94	0	108	41	34	11	12	1.79
102282--102353	37	2.0	37	91	2	119	37	37	12	12	1.81
108458--108508	25	2.1	24	82	10	59	33	1	1	62	1.17

Tables:   1

The End!