Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001406.1 Hibiscus syriacus cultivar Beakdansim tig00002743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78592

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2140--2208
30
2.3
30
78
9
77
28
15
24
30
1.96
3273--3395
31
4.0
31
92
0
201
37
21
18
21
1.94
7010--7056
20
2.3
20
92
0
85
29
25
23
21
1.99
7681--7739
30
1.9
31
86
3
84
28
18
11
40
1.86
8046--8101
28
2.0
28
96
0
103
41
25
8
25
1.84
8331--8401
35
2.0
35
100
0
142
19
16
28
35
1.94
12094--12144
21
2.4
21
83
9
59
52
3
0
43
1.19
12169--12207
19
2.1
19
90
0
60
53
0
0
46
1.00
13602--13723
62
2.0
62
93
3
210
41
21
16
20
1.90
24558--24620
2
31.5
2
100
0
126
49
0
0
50
1.00
25699--25816
59
2.0
60
83
6
150
51
2
12
33
1.53
28544--28691
42
3.5
42
80
8
156
26
16
6
51
1.67
28568--28729
42
3.8
42
82
4
166
25
17
5
51
1.67
36023--36064
21
2.0
20
86
4
57
38
14
7
40
1.73
40700--40741
21
2.0
20
86
4
57
38
14
7
40
1.73
45082--45128
3
15.7
3
81
0
58
59
2
4
34
1.29
58750--58839
47
1.9
46
86
2
126
42
15
24
17
1.88
59618--60183
105
5.4
105
97
0
1033
33
25
18
23
1.97
71049--71096
2
24.5
2
95
4
89
47
0
0
52
1.00
71717--71773
19
2.9
20
86
5
80
15
42
1
40
1.58
72227--72298
30
2.4
30
92
0
126
40
11
13
34
1.81

Tables:   1

The End!