genome.fa.s1407.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001407.1 Hibiscus syriacus cultivar Beakdansim tig00002744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71090

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16453--16491	16	2.4	16	91	0	60	20	28	17	33	1.96
16640--16675	18	2.1	17	89	5	54	38	0	2	58	1.13
17422--17607	31	5.8	30	72	21	128	49	3	4	42	1.40
17485--17546	14	4.4	14	74	11	54	43	1	8	46	1.42
17433--17608	66	2.6	67	77	13	184	48	3	5	42	1.41
17487--17578	43	2.2	41	88	5	130	45	3	6	44	1.45
17393--17642	132	1.9	131	80	8	294	48	3	5	43	1.43
17479--17642	66	2.5	63	79	11	161	47	4	5	42	1.48
17618--17671	21	2.5	21	85	8	65	46	5	5	42	1.50
17682--17797	60	1.9	60	96	0	214	42	12	6	39	1.67
18548--18622	35	2.1	35	92	0	123	33	29	28	9	1.88
18700--18774	24	3.2	24	88	1	116	36	21	17	25	1.95
18704--18780	23	3.3	23	85	3	109	36	20	18	24	1.95
18683--18796	47	2.4	47	79	5	124	40	19	14	25	1.90
19933--19968	18	2.0	18	88	0	54	30	16	0	52	1.44
21257--21296	7	5.4	7	88	11	62	25	27	35	12	1.92
21258--21312	8	7.5	8	82	17	75	21	25	38	14	1.92
21258--21296	15	2.6	15	100	0	78	25	25	35	12	1.92
21286--21373	13	6.4	13	83	12	95	17	19	46	17	1.84
21280--21334	18	2.9	18	89	8	74	14	21	45	18	1.85
21286--21373	26	3.0	31	77	16	114	17	19	46	17	1.84
23403--23477	35	2.1	35	92	0	123	33	29	28	9	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23555--23629	24	3.2	24	88	1	116	36	21	17	25	1.95
23559--23635	23	3.3	23	85	3	109	36	20	18	24	1.95
23538--23651	47	2.4	47	79	5	124	40	19	14	25	1.90
24789--24824	18	2.0	18	88	0	54	30	16	0	52	1.44
26113--26152	7	5.4	7	88	11	62	25	27	35	12	1.92
26114--26168	8	7.5	8	82	17	75	21	25	38	14	1.92
26114--26152	15	2.6	15	100	0	78	25	25	35	12	1.92
26136--26209	18	4.2	18	75	21	77	14	21	45	17	1.84
26142--26209	31	2.2	31	94	0	118	13	22	47	17	1.82
26142--26173	13	2.5	13	100	0	64	12	25	46	15	1.81
26168--26203	13	2.8	13	86	0	54	13	19	47	19	1.83
26990--27132	2	73.5	2	64	20	54	44	4	2	48	1.39
26990--27147	15	10.3	15	69	18	62	44	4	2	48	1.36
27093--27132	21	1.9	21	90	10	64	45	7	2	45	1.45
27027--27191	83	2.0	83	94	3	289	43	5	2	48	1.39
27119--27161	15	3.0	14	83	6	50	46	2	0	51	1.13
27474--27676	2	105.0	2	72	15	151	46	3	1	47	1.32
27863--27924	19	3.3	19	75	8	72	25	29	0	45	1.54
28054--28139	13	6.3	13	77	8	82	41	4	6	46	1.51
28153--28207	19	2.9	19	87	12	71	47	1	3	47	1.30
33948--34059	33	3.4	33	91	1	172	13	8	38	40	1.74
34589--34646	18	3.3	17	78	7	62	32	24	6	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38114--38203	32	2.9	31	83	3	126	58	8	14	17	1.61
38177--38278	31	3.4	30	72	13	75	49	3	18	28	1.65
39847--39889	22	2.0	22	85	0	59	62	4	0	32	1.15
42391--42419	2	14.5	2	100	0	58	48	0	0	51	1.00
43734--43782	22	2.2	22	92	0	80	42	18	10	28	1.83
50562--50605	21	2.1	21	87	4	63	68	0	13	18	1.22
50544--50618	26	2.9	26	83	13	84	66	0	17	16	1.25
50556--50606	20	2.6	20	80	20	63	66	0	15	17	1.25
55228--55284	25	2.3	25	100	0	114	29	15	19	35	1.93
67038--67076	12	3.2	12	82	13	53	28	35	15	20	1.93
69923--69968	20	2.3	19	85	14	58	26	15	8	50	1.73

Tables:   1

The End!