genome.fa.s1409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001409.1 Hibiscus syriacus cultivar Beakdansim tig00002746_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124107

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--354	30	12.0	30	92	5	589	23	21	22	32	1.98
5417--5442	4	6.5	4	100	0	52	26	0	26	46	1.53
14160--14204	24	2.0	24	86	8	67	35	0	2	62	1.08
14160--14250	23	3.9	23	69	22	64	31	1	5	61	1.26
22083--22114	15	2.1	15	100	0	64	46	18	0	34	1.49
23917--23997	27	2.9	29	83	7	103	39	18	11	30	1.86
27547--27629	29	2.9	29	90	0	130	40	18	12	28	1.86
28887--29288	158	2.5	158	87	4	571	45	5	20	28	1.74
29482--29606	60	2.1	60	84	3	162	32	16	16	35	1.91
30444--30512	31	2.2	31	100	0	138	44	7	8	39	1.63
32334--32389	19	2.9	20	86	7	80	33	30	16	19	1.94
32434--32505	19	3.7	19	88	3	99	40	20	6	31	1.79
32700--32738	16	2.5	15	84	8	51	28	5	0	66	1.12
33480--33533	24	2.2	24	90	0	81	22	18	18	40	1.91
36018--36082	34	1.9	34	83	0	85	24	18	23	33	1.96
37664--37781	21	5.6	21	77	11	107	23	21	33	21	1.97
37664--37786	42	2.9	42	87	0	183	24	21	34	20	1.97
37926--37967	4	10.5	4	84	0	57	69	2	2	26	1.13
38065--38114	21	2.4	21	80	6	57	32	30	18	20	1.96
38080--38199	63	1.9	62	83	6	152	32	32	12	22	1.91
38100--38239	63	2.2	63	81	5	158	30	35	13	20	1.91
39932--40082	20	7.8	20	81	12	172	50	18	17	12	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40461--40524	22	2.8	23	83	9	87	25	14	40	20	1.89
40936--40970	15	2.3	15	100	0	70	34	20	14	31	1.92
43072--43105	15	2.3	15	100	0	68	32	29	32	5	1.81
58508--58635	64	2.0	64	92	6	215	28	19	21	31	1.97
58980--59006	11	2.5	11	100	0	54	44	0	7	48	1.31
60277--60409	60	2.2	60	77	11	137	34	24	5	36	1.78
61300--61344	21	2.1	22	87	4	65	37	6	0	55	1.26
64321--64416	34	3.0	33	76	15	96	45	0	0	54	0.99
64465--64535	30	2.4	30	97	2	135	15	32	16	35	1.91
65087--65122	18	2.0	18	100	0	72	27	16	11	44	1.82
70210--70687	141	3.2	145	80	8	498	36	21	13	29	1.91
70397--70687	156	1.8	159	82	7	378	36	20	14	29	1.92
71247--71288	20	2.1	20	90	0	66	38	23	11	26	1.90
72200--72326	64	2.0	64	92	0	209	33	18	12	35	1.89
74909--75209	97	3.0	96	79	9	341	32	22	15	29	1.95
74999--75208	106	2.0	106	86	1	296	32	22	15	29	1.95
75573--75652	30	2.7	30	90	1	117	40	16	10	33	1.82
77744--77885	60	2.4	60	81	0	149	38	12	4	45	1.62
78846--78902	26	2.1	28	83	6	73	43	0	0	56	0.99
89755--89822	35	1.9	35	87	0	100	45	19	0	35	1.50
90414--90488	35	2.1	35	85	4	98	42	18	1	37	1.59
90484--90560	35	2.2	35	88	0	118	37	1	19	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89510--90939	659	2.2	658	93	1	2401	35	14	15	35	1.88
92931--92992	29	2.1	29	96	0	115	41	9	17	30	1.82
104227--104265	18	2.2	18	85	0	51	35	2	0	61	1.10
107398--107430	14	2.3	15	89	5	50	21	6	0	72	1.05
108067--108106	18	2.2	18	100	0	80	12	20	5	62	1.48
116465--116510	23	2.0	23	86	0	65	28	13	39	19	1.89
120973--121040	29	2.3	31	80	9	81	36	1	1	60	1.15
122717--122788	21	3.4	21	75	7	83	22	34	23	19	1.96
122720--122828	42	2.6	42	80	2	112	26	33	20	20	1.97
123274--123315	13	3.3	13	96	3	77	54	0	0	45	0.99
123959--124013	24	2.3	23	75	3	56	72	3	5	18	1.18

Tables:   1

The End!