Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000141.1 Hibiscus syriacus cultivar Beakdansim tig00000256_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89967

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1189--1226
20
1.9
20
84
10
51
5
26
23
44
1.74
3162--3198
18
2.1
18
100
0
74
37
10
16
35
1.83
3932--4017
31
2.7
32
84
8
122
23
13
24
38
1.91
5757--5867
31
3.6
31
86
0
150
36
14
16
32
1.89
12400--12438
16
2.4
16
86
0
51
20
25
17
35
1.95
12415--12456
16
2.6
16
85
7
50
28
19
16
35
1.93
12636--12675
19
2.1
19
85
0
53
30
10
0
60
1.30
17223--17264
12
2.9
15
77
22
54
57
0
0
42
0.99
17221--17277
22
2.6
20
79
17
60
50
1
0
47
1.11
17297--17480
31
5.8
31
70
21
96
49
3
3
42
1.38
17428--17480
15
3.5
15
73
14
54
52
3
1
41
1.30
17489--17543
21
2.6
21
82
0
74
45
5
9
40
1.59
17590--17647
22
2.6
22
80
15
66
44
5
8
41
1.57
17596--17649
24
2.2
25
80
9
67
46
5
7
40
1.55
17627--17660
13
2.5
13
90
4
50
41
2
8
47
1.50
17574--17709
57
2.4
57
86
4
188
41
6
8
42
1.62
17781--17812
7
4.6
7
100
0
64
12
0
40
46
1.42
17774--17812
14
2.8
14
92
0
51
15
0
35
48
1.45
17839--17888
15
3.4
15
78
13
59
38
2
10
50
1.48
17839--17883
13
3.3
13
79
11
54
37
0
11
51
1.38
17865--17904
20
2.0
20
85
0
53
37
10
7
45
1.66
17890--17963
37
2.1
36
82
5
87
37
10
10
40
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18089--18429
20
16.1
20
72
17
167
46
5
3
45
1.42
18118--18301
49
3.7
50
74
16
166
46
4
2
45
1.38
18188--18349
11
15.5
11
67
14
58
48
3
3
44
1.36
18190--18242
17
2.9
17
83
8
52
50
3
1
43
1.30
18226--18279
21
2.5
22
77
14
60
48
3
3
44
1.38
29775--29821
13
3.7
13
76
23
55
63
0
0
36
0.94
32301--32364
26
2.4
26
84
10
76
28
21
20
29
1.98
40925--41027
45
2.3
45
96
0
188
39
17
13
29
1.88
41009--41096
45
1.9
46
88
2
133
29
25
17
28
1.97
42910--42984
31
2.4
31
90
0
123
54
8
8
29
1.58
54578--54636
23
2.6
23
86
0
73
18
22
8
50
1.73
54602--54648
23
2.1
23
84
4
60
21
14
6
57
1.60
54899--54942
21
2.1
21
95
0
79
22
4
11
61
1.48
56545--56643
49
2.0
50
80
9
114
47
2
0
50
1.12
57125--57244
42
2.9
42
89
0
186
47
20
15
16
1.83
58717--58785
29
2.4
29
97
0
129
20
11
23
44
1.83
65332--65383
23
2.3
22
80
3
59
17
42
25
15
1.88
65392--65463
29
2.5
29
95
0
126
23
11
20
44
1.84
67360--67402
18
2.3
20
80
15
56
23
0
4
72
1.04
71107--71185
29
2.7
28
84
11
97
31
20
8
39
1.83
71938--71992
23
2.4
23
81
0
56
21
10
14
52
1.72
71949--72007
23
2.7
22
84
5
66
13
6
11
67
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71785--73056
635
2.0
634
95
0
2287
29
13
15
41
1.85
73552--73582
16
1.9
16
100
0
62
35
25
6
32
1.82
73553--73594
16
2.7
16
88
3
59
33
26
7
33
1.83
82546--82612
17
3.8
17
80
4
62
58
2
0
38
1.14
82698--82738
20
2.2
19
83
16
50
68
2
2
26
1.15
82723--82814
33
2.6
33
76
17
87
58
0
1
40
1.05

Tables:   1

The End!