genome.fa.s1410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001410.1 Hibiscus syriacus cultivar Beakdansim tig00002747_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131808

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7764--7803	12	3.3	12	85	0	53	37	5	45	12	1.64
12360--12419	29	2.0	31	90	6	97	41	16	6	35	1.75
18279--18348	18	4.2	18	75	17	78	18	48	18	14	1.81
18284--18344	31	2.0	31	93	0	104	18	47	18	16	1.83
18301--18335	13	2.7	13	90	0	61	17	48	20	14	1.81
18322--18375	25	2.1	27	82	6	67	16	35	25	22	1.95
20880--20970	24	3.8	24	85	2	121	25	17	19	37	1.94
23136--23205	18	4.2	18	75	17	78	18	48	18	14	1.81
23141--23201	31	2.0	31	93	0	104	18	47	18	16	1.83
23158--23192	13	2.7	13	90	0	61	17	48	20	14	1.81
23179--23232	25	2.1	27	82	6	67	16	35	25	22	1.95
25742--25832	24	3.8	24	85	2	121	25	17	19	37	1.94
25742--25832	47	1.9	48	88	2	139	25	17	19	37	1.94
29967--30067	29	3.5	29	70	18	75	50	1	7	39	1.43
30344--30397	15	3.9	14	78	7	56	72	1	3	22	1.10
30344--30396	27	2.0	27	81	7	63	73	1	3	20	1.08
33209--33318	30	3.7	29	80	3	112	34	16	21	27	1.95
35326--35362	2	18.5	2	100	0	74	48	0	0	51	1.00
38703--38774	22	3.3	21	84	3	72	25	15	18	41	1.89
42527--42584	29	2.0	29	100	0	116	37	24	17	20	1.93
45372--45433	20	3.0	21	78	7	63	37	22	19	20	1.95
47715--47747	13	2.5	13	95	0	57	72	0	15	12	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47733--47815	16	5.1	16	79	16	82	75	2	15	6	1.09
47733--47826	34	2.9	32	81	12	86	77	3	13	5	1.06
47760--47826	18	3.9	16	83	14	66	79	4	13	2	1.01
47758--47825	16	4.2	16	82	12	68	79	4	13	2	1.00
48759--48795	18	2.1	18	90	10	58	24	18	0	56	1.41
48781--48828	23	2.1	23	84	3	62	33	16	2	47	1.58
48808--48879	35	2.0	36	86	2	101	31	16	1	50	1.54
50623--51971	122	11.1	122	79	3	1153	35	21	14	28	1.93
50623--51971	366	3.7	361	79	4	1273	35	21	14	28	1.93
51867--52049	97	1.9	97	85	6	255	35	24	10	29	1.89
51964--52552	121	4.8	122	78	3	420	34	24	13	27	1.93
51623--52292	340	2.0	341	80	2	747	35	22	13	28	1.92
51964--52494	122	4.4	122	80	4	504	35	23	12	28	1.92
51964--52494	243	2.2	240	80	8	576	35	23	12	28	1.92
53349--53377	3	10.0	3	92	7	51	34	0	0	65	0.93
58926--58953	3	9.3	3	100	0	56	32	0	0	67	0.91
67970--68017	19	2.5	19	89	0	69	41	8	18	31	1.80
70651--70688	13	3.2	12	82	10	51	81	10	7	0	0.87
73878--73928	20	2.6	20	93	3	86	35	13	5	45	1.68
75031--75090	27	2.3	26	88	5	86	50	5	10	35	1.58
82720--82751	17	2.0	17	88	11	50	56	0	0	43	0.99
82969--83018	23	2.0	26	85	11	70	46	2	0	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85070--85111	7	6.0	7	81	8	50	14	16	14	54	1.71
85070--85111	15	3.0	14	83	10	50	14	16	14	54	1.71
85171--85230	27	2.3	27	85	2	86	21	13	6	58	1.58
85170--85197	12	2.3	12	100	0	56	25	14	7	53	1.66
86859--86914	2	28.0	2	100	0	112	50	0	0	50	1.00
87207--87250	15	2.9	15	82	3	52	68	4	25	2	1.20
92229--92281	22	2.4	22	84	9	72	33	16	13	35	1.88
92677--93108	113	3.8	113	91	2	631	39	15	19	25	1.91
93063--93107	24	1.9	23	82	13	56	48	6	26	17	1.72
93052--93151	40	2.5	40	88	0	155	49	8	22	21	1.75
92933--93262	153	2.2	153	86	1	455	42	13	19	24	1.87
92825--93376	266	2.1	266	90	0	863	40	13	19	26	1.89
93086--93488	113	3.6	113	89	0	574	40	13	19	26	1.88
92712--93869	379	3.1	379	94	0	2010	39	14	19	26	1.90
93199--93756	266	2.1	266	89	0	848	41	13	19	26	1.88
93442--93486	24	1.9	23	82	13	56	48	6	26	17	1.72
93431--93530	40	2.5	40	88	0	146	50	7	21	22	1.72
93312--93640	153	2.2	153	87	3	466	42	12	20	25	1.86
93470--94116	113	5.6	113	85	3	753	38	14	19	27	1.90
92702--93984	492	2.6	489	84	3	1601	39	14	19	26	1.90
96014--96062	23	2.0	25	84	7	66	44	2	0	53	1.12
97671--97755	30	2.9	29	73	5	80	32	18	7	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98935--98959	12	2.1	12	100	0	50	48	0	0	52	1.00
105472--105501	13	2.2	14	94	5	53	36	0	0	63	0.95
108557--108598	18	2.3	18	80	12	50	47	2	0	50	1.14
111362--111398	16	2.2	18	86	13	53	43	0	2	54	1.14
112508--112552	19	2.4	19	84	0	54	35	0	8	55	1.31
115919--115959	22	2.0	20	90	9	64	65	4	12	17	1.42
122817--123420	270	2.3	261	88	5	899	26	11	22	39	1.88
123386--123473	38	2.4	37	86	3	131	11	12	37	38	1.79
124043--124088	18	2.7	18	93	6	78	28	32	6	32	1.83

Tables:   1

The End!