Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001411.1 Hibiscus syriacus cultivar Beakdansim tig00002748_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68782

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
687--731
23
2.0
23
86
0
63
48
17
11
22
1.78
938--966
14
2.0
15
93
6
51
0
17
0
82
0.66
4063--4109
4
11.0
4
80
19
51
70
2
4
23
1.16
4063--4109
21
2.2
22
85
11
62
70
2
4
23
1.16
4063--4109
17
2.8
16
84
15
51
70
2
4
23
1.16
4720--4766
13
3.6
13
75
11
51
34
2
34
29
1.70
4708--4766
6
9.7
6
75
14
50
35
1
33
28
1.68
9359--9411
27
2.0
26
85
3
70
26
18
28
26
1.98
24197--24345
78
1.9
78
87
2
219
39
9
4
46
1.57
32285--32341
30
1.9
30
88
0
87
47
12
7
33
1.68
33241--33287
2
23.5
2
95
0
85
46
2
0
51
1.13
35058--35237
90
2.0
90
100
0
360
33
18
8
38
1.82
37906--37943
19
2.0
20
89
5
60
60
0
2
36
1.11
39008--39060
26
2.0
26
96
0
97
33
11
9
45
1.72
39048--39198
31
4.9
31
78
11
141
43
11
6
38
1.68
39044--39189
62
2.3
63
84
5
190
41
13
6
38
1.70
45180--45230
2
25.5
2
100
0
102
50
0
0
49
1.00
51811--51849
11
3.6
11
79
6
53
79
0
10
10
0.94
55565--55597
12
2.8
12
86
4
50
0
18
0
81
0.68
56526--56598
23
3.2
20
68
25
56
65
6
9
17
1.43
56526--56624
47
2.1
48
98
1
191
65
6
12
16
1.44
56545--56624
27
3.2
27
70
23
93
65
5
13
16
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62549--62612
34
1.9
33
81
9
76
37
1
4
56
1.30
62618--62670
2
27.0
2
96
3
99
49
0
0
50
1.00
65313--65357
19
2.4
19
92
0
72
35
2
15
46
1.58
67378--67414
19
1.9
19
89
10
58
29
5
0
64
1.15
67891--67925
2
17.5
2
100
0
70
48
0
0
51
1.00
68239--68284
2
23.5
2
86
4
67
47
0
2
50
1.13

Tables:   1

The End!