Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001412.1 Hibiscus syriacus cultivar Beakdansim tig00002749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51695

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11408--11488
32
2.6
32
82
5
94
45
6
4
43
1.50
11964--11998
18
1.9
18
88
0
52
34
0
5
60
1.21
13337--13558
118
1.9
118
85
3
313
39
21
17
21
1.93
13337--13628
118
2.6
113
80
10
269
36
22
17
22
1.95
15945--16040
48
2.0
48
93
0
165
30
10
20
38
1.86
16912--16949
20
1.9
20
100
0
76
36
10
28
23
1.88
17106--17178
36
2.0
36
82
10
87
50
4
1
43
1.29
18753--18789
19
1.9
19
88
0
56
48
2
16
32
1.60
20566--20646
41
2.0
41
97
0
153
28
12
8
50
1.69
24231--24263
15
2.2
15
100
0
66
39
6
12
42
1.67
27563--27632
12
5.8
12
74
12
63
15
14
17
52
1.74
27563--27632
24
2.9
24
82
4
88
15
14
17
52
1.74
32152--32209
24
2.4
25
75
11
59
22
17
13
46
1.83
32191--32248
12
4.8
12
78
0
62
13
13
18
53
1.73
33298--33368
31
2.3
30
83
7
90
47
7
5
39
1.54
34081--34140
23
2.6
23
82
17
72
43
1
1
53
1.20
34099--34146
21
2.3
20
79
13
53
43
0
2
54
1.12
34232--34311
42
2.0
42
85
9
112
50
1
3
45
1.28
34232--34298
22
3.2
21
72
16
59
50
1
1
46
1.19
35015--35180
88
1.9
87
91
6
273
57
1
3
37
1.24
35027--35222
29
6.5
30
74
15
149
56
1
5
37
1.28
35027--35221
30
6.4
33
71
21
135
55
1
5
37
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35213--35285
31
2.5
30
86
10
98
34
1
1
63
1.12
35361--35422
18
3.2
19
71
22
56
48
6
3
41
1.45
42971--43097
67
1.9
67
95
0
227
32
20
16
30
1.95
50541--50588
24
1.9
26
87
8
73
50
2
4
43
1.33

Tables:   1

The End!