genome.fa.s1413.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001413.1 Hibiscus syriacus cultivar Beakdansim tig00002750_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112515

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3742--3782	21	2.0	21	95	0	73	34	26	14	24	1.94
3838--3881	21	2.1	21	91	0	70	22	25	27	25	2.00
7254--7293	21	1.9	21	89	0	62	30	5	0	65	1.14
7669--7714	24	2.0	23	86	4	65	32	2	10	54	1.47
14000--14046	23	2.0	23	91	0	76	27	17	29	25	1.97
15544--15621	23	3.4	23	84	7	97	33	26	17	21	1.96
15556--15621	22	2.9	23	84	4	89	34	24	16	24	1.95
15732--15816	15	5.7	15	79	5	82	43	21	3	31	1.69
16557--16752	76	2.6	76	87	4	272	20	24	31	23	1.98
16934--16987	28	1.9	28	100	0	108	37	14	1	46	1.56
17296--17394	21	4.8	20	72	6	72	36	23	19	21	1.95
17362--17591	20	11.4	20	81	6	223	37	25	17	19	1.94
18284--18330	24	2.0	24	87	8	69	25	14	21	38	1.92
18505--18529	12	2.1	12	100	0	50	72	0	28	0	0.86
20824--20975	72	2.1	72	95	2	270	46	17	21	14	1.83
20810--21014	53	3.9	52	85	10	267	44	17	22	14	1.85
21004--21121	53	2.2	52	95	3	209	14	24	16	44	1.86
21023--21121	20	5.4	19	81	14	127	15	23	16	45	1.84
21228--21264	14	2.6	14	91	0	65	45	21	0	32	1.52
22744--22790	21	2.3	21	96	3	87	21	21	38	19	1.94
22744--22801	21	2.8	21	89	2	73	20	20	36	22	1.95
23209--23381	19	9.6	19	77	12	150	46	23	19	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23303--23359	14	3.7	14	75	20	51	43	22	22	10	1.84
23284--23376	33	2.8	33	93	0	159	47	21	20	10	1.80
23243--23381	52	2.7	52	72	8	138	46	23	20	9	1.79
23388--23452	14	4.3	14	73	17	58	9	21	21	47	1.78
23377--23470	33	2.8	33	88	0	143	9	19	23	47	1.78
23377--23489	19	6.5	18	73	20	98	8	18	24	47	1.77
23377--23505	19	7.3	19	70	21	93	10	17	25	46	1.79
23671--23703	17	1.9	17	88	11	50	45	12	18	24	1.83
25388--25451	20	3.2	20	82	4	92	46	15	25	12	1.81
25386--25450	21	3.1	21	82	4	96	47	15	26	10	1.78
25476--25584	19	5.8	19	75	16	84	11	20	20	47	1.81
25522--25595	21	3.5	21	80	7	96	13	21	17	47	1.82
25675--25745	33	2.2	33	92	0	115	49	16	22	11	1.78
26103--26296	20	9.6	20	83	6	230	18	18	27	35	1.94
28735--28776	23	1.9	21	90	9	66	19	26	33	21	1.97
32591--32630	21	1.9	21	85	10	55	35	10	2	52	1.48
34555--34751	75	2.6	76	90	2	290	20	24	32	22	1.98
34930--34985	28	2.0	28	100	0	112	35	14	3	46	1.62
37139--37240	3	34.0	3	76	16	54	44	0	0	55	0.99
37144--37242	8	13.0	8	74	19	88	44	0	0	55	0.99
37134--37242	19	5.6	20	72	23	83	45	0	0	54	1.00
37139--37245	30	3.7	27	78	20	110	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37134--37245	49	2.3	48	80	13	133	46	0	0	53	1.00
42253--42302	25	2.0	24	81	11	57	46	2	2	50	1.24
44101--44186	29	3.0	29	67	12	70	33	22	4	39	1.75
48423--48458	18	2.0	18	94	0	63	19	22	44	13	1.86
51233--51299	28	2.3	30	84	5	93	70	0	26	2	1.02
51247--51298	23	2.3	24	83	9	65	69	0	28	1	0.99
58827--58938	56	2.0	56	87	0	161	28	25	6	39	1.80
70660--70726	35	1.9	35	84	6	91	50	0	0	49	1.00
78641--78681	20	2.0	22	90	9	68	36	21	14	26	1.93
79564--79861	82	3.6	81	82	5	339	43	15	15	25	1.86
79900--79928	3	10.0	3	92	7	51	68	0	31	0	0.89
83438--83615	89	2.0	89	95	0	320	35	14	16	33	1.89
84190--84389	96	2.1	96	99	0	391	21	10	23	45	1.82
87377--87404	14	2.0	14	100	0	56	92	7	0	0	0.37
88222--88273	21	2.4	22	80	3	61	38	3	1	55	1.29
94177--94212	17	2.1	17	89	0	54	91	2	5	0	0.49
94521--94572	27	1.9	27	92	0	86	26	11	19	42	1.85
94523--94592	27	2.7	27	84	6	83	32	12	20	34	1.90
95494--95529	17	2.2	17	90	5	56	33	5	8	52	1.55
108562--108780	71	3.1	71	86	3	298	31	18	15	34	1.92

Tables:   1

The End!