Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001414.1 Hibiscus syriacus cultivar Beakdansim tig00002751_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81687

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
849--877
10
2.7
11
94
5
51
41
10
0
48
1.37
2120--2182
29
2.2
29
78
10
69
52
20
4
22
1.65
8002--8040
20
1.9
20
84
5
51
30
2
0
66
1.05
14399--14465
14
4.8
14
76
7
73
20
1
26
50
1.57
23662--23688
7
3.9
7
100
0
54
59
0
0
40
0.98
23840--23873
12
2.7
13
86
9
52
55
11
0
32
1.36
24203--24362
53
3.1
52
78
3
169
30
24
15
30
1.95
28627--28661
2
17.5
2
100
0
70
48
0
0
51
1.00
32119--32465
175
2.0
175
85
3
466
38
23
11
26
1.88
32638--32676
2
19.5
2
100
0
78
0
48
0
51
1.00
33828--33877
15
3.2
16
76
18
61
44
0
22
34
1.53
35717--35758
21
2.0
21
100
0
84
33
14
4
47
1.65
35719--35764
21
2.2
21
92
0
74
32
15
8
43
1.77
37161--37237
33
2.4
33
84
4
104
44
11
9
35
1.73
37228--37267
21
1.9
21
89
0
62
55
5
7
32
1.50
38771--39462
177
3.9
177
96
0
1287
37
13
9
39
1.78
40381--40422
7
5.9
7
83
5
57
69
0
2
28
1.01
40752--40798
2
23.5
2
100
0
94
51
0
0
48
1.00
40797--40869
21
3.3
22
79
12
69
30
0
5
64
1.16
42793--42840
18
2.6
19
77
6
55
66
0
0
33
0.92
49606--49667
14
4.0
16
73
17
51
24
1
6
67
1.23
49644--49720
5
14.8
5
76
15
52
19
0
6
74
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49644--49703
24
2.4
25
83
10
70
18
0
6
75
1.02
53670--53707
16
2.5
15
87
8
58
18
0
10
71
1.14
61301--61328
2
14.0
2
100
0
56
50
0
0
50
1.00
64998--65024
13
2.1
13
100
0
54
22
25
14
37
1.93
70107--70147
18
2.3
18
100
0
82
34
12
24
29
1.91
81516--81591
24
3.2
24
94
0
134
30
27
23
18
1.98
81528--81591
11
5.5
11
71
14
56
31
26
25
17
1.97

Tables:   1

The End!