Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001415.1 Hibiscus syriacus cultivar Beakdansim tig00002752_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68152

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34--351
42
7.6
42
83
7
423
21
20
22
34
1.96
45--351
21
14.7
21
78
11
294
21
20
23
34
1.97
35--351
82
3.8
82
92
2
499
21
20
23
34
1.97
1086--1115
6
5.2
6
96
4
53
0
16
53
30
1.44
1200--1383
21
9.0
21
68
15
107
35
22
20
22
1.96
1200--1383
42
4.5
41
92
2
291
35
22
20
22
1.96
1884--1924
18
2.3
18
100
0
82
51
9
17
21
1.74
2520--2562
22
2.0
22
90
4
70
48
16
0
34
1.46
6217--6241
2
12.5
2
100
0
50
52
0
0
48
1.00
6286--6330
3
15.0
3
100
0
90
0
33
0
66
0.92
6613--6662
2
25.5
2
95
4
93
52
0
0
48
1.00
8507--8542
2
18.0
2
100
0
72
50
0
0
50
1.00
19244--19318
39
1.9
39
81
5
89
65
16
6
12
1.45
19932--19961
2
15.0
2
100
0
60
50
0
0
50
1.00
24594--24661
23
3.0
23
82
8
93
17
25
26
30
1.97
24691--24724
17
2.1
17
88
5
52
32
23
5
38
1.79
27116--27181
31
2.1
31
94
5
116
25
25
12
36
1.91
27646--27731
35
2.5
35
82
0
91
41
19
1
37
1.59
27700--27742
21
2.0
21
100
0
86
46
13
0
39
1.44
27866--27899
16
2.0
18
88
11
54
26
2
5
64
1.30
28365--28612
130
1.9
130
92
0
415
36
13
14
35
1.85
29900--29958
28
2.1
27
87
6
82
23
3
10
62
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33592--33675
42
2.0
41
95
2
150
46
8
8
36
1.64
36005--36061
21
2.7
21
91
2
87
63
3
0
33
1.12
36013--36061
22
2.3
21
92
3
80
65
4
0
30
1.11
40960--41015
26
2.2
26
87
3
78
33
16
0
50
1.45
47211--47270
29
2.1
29
100
0
120
48
26
13
11
1.76
47515--47729
110
2.0
110
93
0
367
45
16
15
22
1.85
51904--51930
14
1.9
14
100
0
54
51
0
0
48
1.00
57703--57743
3
14.0
3
89
5
57
60
2
0
36
1.10
61301--61406
30
3.4
32
77
5
101
22
15
5
56
1.60
62807--62861
16
3.4
16
92
0
92
58
21
10
9
1.60
64068--64133
33
2.2
29
78
19
73
28
18
27
25
1.98
64355--64416
24
2.6
24
86
0
88
53
22
11
12
1.71
65416--65455
2
20.5
2
94
5
73
50
0
0
50
1.00
65505--65545
18
2.2
18
86
8
55
48
0
4
46
1.23

Tables:   1

The End!