Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001416.1 Hibiscus syriacus cultivar Beakdansim tig00002753_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77225

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4215--4293
31
2.5
31
86
9
108
54
6
13
25
1.63
19302--19753
206
2.1
211
84
12
562
23
12
27
36
1.91
19703--19789
38
2.3
38
94
4
149
8
11
43
36
1.70
23303--23334
12
2.7
12
100
0
64
25
37
37
0
1.56
26642--26718
28
2.6
29
73
17
70
61
6
0
32
1.22
27395--27606
21
9.9
21
73
16
143
20
21
23
34
1.96
27408--27543
69
2.0
67
95
2
245
17
22
24
36
1.95
27479--27603
42
3.0
42
96
0
223
21
19
23
36
1.95
27696--27752
6
9.5
6
98
0
87
38
45
15
0
1.47
28251--28283
6
5.5
6
92
0
57
0
15
48
36
1.45
28374--28567
21
9.2
23
67
16
91
35
22
20
22
1.96
28397--28560
21
8.0
19
73
11
112
34
24
19
21
1.96
28368--28541
42
4.2
42
89
2
280
35
22
19
21
1.96
28368--28520
21
7.4
21
65
19
97
36
21
19
22
1.95
28368--28541
82
2.1
84
93
2
298
35
22
19
21
1.96
28430--28566
21
6.6
21
72
9
120
34
24
19
21
1.96
28575--28627
21
2.5
21
93
0
88
18
22
30
28
1.98
28893--29008
42
2.8
41
92
3
180
16
15
18
50
1.79
29195--29330
31
4.5
31
72
18
92
48
0
0
50
1.11
29203--29246
22
2.0
23
86
4
63
45
0
0
54
0.99
29511--29573
21
3.3
19
71
22
60
50
0
3
46
1.17
29904--29977
25
2.9
26
78
9
73
54
0
1
44
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30836--30887
24
2.2
24
82
0
59
11
15
25
48
1.78
30857--30887
14
2.2
14
94
0
53
9
12
22
54
1.67
30846--30907
24
2.6
24
89
5
90
11
12
19
56
1.66
31893--31981
16
5.7
16
92
2
128
11
11
19
58
1.62
31887--31977
10
9.7
10
66
25
56
10
12
20
56
1.66
39571--39601
2
15.5
2
100
0
62
48
0
0
51
1.00
57090--57221
39
3.4
39
68
19
114
48
4
3
43
1.38
57337--57382
20
2.4
18
83
13
65
21
30
8
39
1.84
63148--63493
177
2.0
175
87
5
499
44
9
3
42
1.54
64872--64957
45
1.9
45
92
0
145
37
16
17
29
1.91
65181--65231
24
2.3
21
83
12
59
35
3
1
58
1.28
65750--65804
2
27.5
2
100
0
110
49
0
0
50
1.00
66385--66446
23
2.7
23
89
0
88
25
14
33
25
1.94
66853--66890
15
2.6
15
87
4
51
34
0
2
63
1.09
73241--73280
21
1.9
21
94
0
71
17
25
22
35
1.95
75514--75558
21
2.1
21
100
0
90
33
26
15
24
1.95

Tables:   1

The End!