Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001418.1 Hibiscus syriacus cultivar Beakdansim tig00002756_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51677

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8740--8836
51
1.9
51
89
0
149
28
13
21
36
1.91
11466--11517
23
2.3
23
89
0
77
40
7
19
32
1.80
11353--11571
87
2.5
87
95
0
384
43
10
13
32
1.79
11489--11644
64
2.5
64
89
1
233
44
10
12
32
1.76
12236--12285
24
2.0
25
84
3
66
52
2
0
46
1.12
12233--12318
30
2.9
30
75
18
76
48
1
1
48
1.16
12423--12466
17
2.6
17
96
0
79
36
0
9
54
1.32
13052--13138
14
6.2
14
71
9
52
45
2
1
50
1.21
13066--13134
28
2.5
28
74
6
70
47
1
1
49
1.19
12447--14355
785
2.4
779
88
6
2917
38
8
8
44
1.66
13781--13840
23
2.3
27
83
13
74
53
3
1
41
1.27
13819--13915
31
3.2
31
77
10
85
49
1
1
48
1.14
13819--13888
30
2.3
32
82
7
83
48
1
0
50
1.09
13819--13905
31
2.8
32
79
14
87
47
1
1
50
1.16
18261--18322
27
2.4
25
81
7
63
6
17
4
70
1.26
28748--28809
28
2.2
28
79
0
70
48
14
17
19
1.81
29412--29505
44
2.2
43
88
1
134
31
25
13
28
1.94
29435--29518
43
1.9
44
85
7
118
30
22
15
30
1.95
39969--39998
15
2.0
15
100
0
60
13
20
20
46
1.83
45322--45357
17
2.2
17
90
5
56
11
5
8
75
1.19
49828--49988
42
3.9
42
90
4
254
16
20
17
45
1.86
49828--49985
83
1.9
82
92
1
262
15
20
17
46
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50147--50212
20
3.2
21
80
18
61
48
0
0
51
1.00
50487--50556
20
3.5
20
96
0
131
35
14
10
40
1.79
50487--50565
40
2.0
40
89
0
122
35
15
8
40
1.78
50539--50605
15
4.5
15
84
3
91
34
19
7
38
1.80
50539--50608
30
2.4
30
97
2
133
32
18
7
41
1.78

Tables:   1

The End!